Hb_005348_130

Information

Type -
Description -
Location Contig5348: 121333-123318
Sequence    

Annotation

kegg
ID rcu:RCOM_0711010
description Serine/threonine-protein kinase PBS1, putative
nr
ID XP_012077079.1
description PREDICTED: pollen receptor-like kinase 3 [Jatropha curcas]
swissprot
ID Q9M1L7
description Pollen receptor-like kinase 3 OS=Arabidopsis thaliana GN=PRK3 PE=1 SV=1
trembl
ID A0A067KCR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07508 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable inactive leucine-rich repeat receptor-like protein kinase at5g20690

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005348_130 0.0 - - PREDICTED: pollen receptor-like kinase 3 [Jatropha curcas]
2 Hb_148146_030 0.1288556405 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
3 Hb_003762_010 0.1671555495 - - -
4 Hb_009554_020 0.1976478058 - - PREDICTED: em-like protein GEA6 [Sesamum indicum]
5 Hb_007970_030 0.199002198 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
6 Hb_182291_020 0.1996110156 - - hypothetical protein CICLE_v10029871mg [Citrus clementina]
7 Hb_000116_340 0.2003618017 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
8 Hb_003767_020 0.2071194714 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
9 Hb_000160_340 0.2102307658 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
10 Hb_002893_140 0.2164551405 - - Glycine-rich cell wall structural protein precursor, putative [Ricinus communis]
11 Hb_005015_040 0.2177254771 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana sylvestris]
12 Hb_001638_100 0.2239634985 - - PREDICTED: probable protein S-acyltransferase 12 [Vitis vinifera]
13 Hb_000073_070 0.2284175777 - - -
14 Hb_000495_090 0.2289629856 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
15 Hb_105632_010 0.2320804537 - - -
16 Hb_005743_020 0.2320900706 - - -
17 Hb_000069_250 0.238469798 - - hypothetical protein JCGZ_14250 [Jatropha curcas]
18 Hb_001274_060 0.2499270126 - - PREDICTED: uncharacterized protein LOC105802656 [Gossypium raimondii]
19 Hb_000380_030 0.2528878488 - - Kiwellin, putative [Ricinus communis]
20 Hb_000122_090 0.2531009254 - - hypothetical protein RCOM_0688100 [Ricinus communis]

Gene co-expression network

sample Hb_005348_130 Hb_005348_130 Hb_148146_030 Hb_148146_030 Hb_005348_130--Hb_148146_030 Hb_003762_010 Hb_003762_010 Hb_005348_130--Hb_003762_010 Hb_009554_020 Hb_009554_020 Hb_005348_130--Hb_009554_020 Hb_007970_030 Hb_007970_030 Hb_005348_130--Hb_007970_030 Hb_182291_020 Hb_182291_020 Hb_005348_130--Hb_182291_020 Hb_000116_340 Hb_000116_340 Hb_005348_130--Hb_000116_340 Hb_005015_040 Hb_005015_040 Hb_148146_030--Hb_005015_040 Hb_148146_030--Hb_009554_020 Hb_136620_010 Hb_136620_010 Hb_148146_030--Hb_136620_010 Hb_148146_030--Hb_007970_030 Hb_000069_250 Hb_000069_250 Hb_148146_030--Hb_000069_250 Hb_002613_030 Hb_002613_030 Hb_003762_010--Hb_002613_030 Hb_000896_130 Hb_000896_130 Hb_003762_010--Hb_000896_130 Hb_052764_120 Hb_052764_120 Hb_003762_010--Hb_052764_120 Hb_010578_020 Hb_010578_020 Hb_003762_010--Hb_010578_020 Hb_003207_220 Hb_003207_220 Hb_003762_010--Hb_003207_220 Hb_009554_020--Hb_005015_040 Hb_009554_020--Hb_007970_030 Hb_009554_020--Hb_182291_020 Hb_009554_020--Hb_000116_340 Hb_003767_020 Hb_003767_020 Hb_009554_020--Hb_003767_020 Hb_000160_340 Hb_000160_340 Hb_009554_020--Hb_000160_340 Hb_007970_030--Hb_182291_020 Hb_007970_030--Hb_000116_340 Hb_007970_030--Hb_003767_020 Hb_007970_030--Hb_000160_340 Hb_002893_140 Hb_002893_140 Hb_007970_030--Hb_002893_140 Hb_182291_020--Hb_000116_340 Hb_182291_020--Hb_003767_020 Hb_182291_020--Hb_000160_340 Hb_182291_020--Hb_002893_140 Hb_000116_340--Hb_003767_020 Hb_000116_340--Hb_000160_340 Hb_000116_340--Hb_002893_140 Hb_000073_070 Hb_000073_070 Hb_000116_340--Hb_000073_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0193248 0.113881 0 0.0106434 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis