Hb_002613_030

Information

Type transcription factor
Description TF Family: GRF
Location Contig2613: 23702-24576
Sequence    

Annotation

kegg
ID rcu:RCOM_1681810
description hypothetical protein
nr
ID XP_002509650.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6AWX7
description Growth-regulating factor 12 OS=Oryza sativa subsp. japonica GN=GRF12 PE=2 SV=1
trembl
ID B9RBW6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1681810 PE=4 SV=1
Gene Ontology
ID GO:0005634
description growth-regulating factor 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002613_030 0.0 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
2 Hb_002486_090 0.0957744236 - - hypothetical protein POPTR_0005s06910g [Populus trichocarpa]
3 Hb_004724_250 0.1147455696 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
4 Hb_000896_130 0.1159662873 transcription factor TF Family: CPP cysteine-rich polycomb-like family protein [Populus trichocarpa]
5 Hb_000164_030 0.1254922915 - - PREDICTED: RING-H2 finger protein ATL14-like [Zea mays]
6 Hb_064971_010 0.1271145566 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
7 Hb_048141_060 0.1293706194 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
8 Hb_003762_010 0.1390185949 - - -
9 Hb_144649_010 0.1407767553 - - 60S ribosomal protein L34A [Hevea brasiliensis]
10 Hb_010578_020 0.1442878139 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000157_060 0.1544991455 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
12 Hb_002267_010 0.1572172558 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]
13 Hb_000668_190 0.160727082 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
14 Hb_052764_120 0.1619180145 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
15 Hb_006142_020 0.1639637899 - - JHL25P11.12 [Jatropha curcas]
16 Hb_028187_010 0.1695953102 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
17 Hb_002534_040 0.1702941907 - - Calmodulin, putative [Ricinus communis]
18 Hb_002435_010 0.1712054524 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
19 Hb_002447_060 0.1727851553 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
20 Hb_005649_070 0.1753460893 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002613_030 Hb_002613_030 Hb_002486_090 Hb_002486_090 Hb_002613_030--Hb_002486_090 Hb_004724_250 Hb_004724_250 Hb_002613_030--Hb_004724_250 Hb_000896_130 Hb_000896_130 Hb_002613_030--Hb_000896_130 Hb_000164_030 Hb_000164_030 Hb_002613_030--Hb_000164_030 Hb_064971_010 Hb_064971_010 Hb_002613_030--Hb_064971_010 Hb_048141_060 Hb_048141_060 Hb_002613_030--Hb_048141_060 Hb_002486_090--Hb_064971_010 Hb_000668_190 Hb_000668_190 Hb_002486_090--Hb_000668_190 Hb_002486_090--Hb_000164_030 Hb_006142_020 Hb_006142_020 Hb_002486_090--Hb_006142_020 Hb_000739_250 Hb_000739_250 Hb_002486_090--Hb_000739_250 Hb_004724_250--Hb_000164_030 Hb_004724_250--Hb_048141_060 Hb_010578_020 Hb_010578_020 Hb_004724_250--Hb_010578_020 Hb_004724_250--Hb_064971_010 Hb_002267_010 Hb_002267_010 Hb_004724_250--Hb_002267_010 Hb_052764_120 Hb_052764_120 Hb_004724_250--Hb_052764_120 Hb_144649_010 Hb_144649_010 Hb_000896_130--Hb_144649_010 Hb_003762_010 Hb_003762_010 Hb_000896_130--Hb_003762_010 Hb_000896_130--Hb_002486_090 Hb_000083_110 Hb_000083_110 Hb_000896_130--Hb_000083_110 Hb_001318_160 Hb_001318_160 Hb_000896_130--Hb_001318_160 Hb_000164_030--Hb_048141_060 Hb_000164_030--Hb_064971_010 Hb_005649_070 Hb_005649_070 Hb_000164_030--Hb_005649_070 Hb_000164_030--Hb_002267_010 Hb_000157_060 Hb_000157_060 Hb_000164_030--Hb_000157_060 Hb_064971_010--Hb_006142_020 Hb_064971_010--Hb_000157_060 Hb_064971_010--Hb_048141_060 Hb_048141_060--Hb_002267_010 Hb_048141_060--Hb_052764_120 Hb_071654_010 Hb_071654_010 Hb_048141_060--Hb_071654_010 Hb_048141_060--Hb_005649_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.199215 2.09424 0.267084 0.0670707 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis