Hb_002740_070

Information

Type -
Description -
Location Contig2740: 143189-145644
Sequence    

Annotation

kegg
ID rcu:RCOM_1436980
description nitrate transporter, putative
nr
ID XP_002512591.1
description nitrate transporter, putative [Ricinus communis]
swissprot
ID Q93VV5
description Protein NRT1/ PTR FAMILY 4.3 OS=Arabidopsis thaliana GN=NPF4.3 PE=2 SV=1
trembl
ID B9RFS2
description Nitrate transporter, putative OS=Ricinus communis GN=RCOM_1436980 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002740_070 0.0 - - nitrate transporter, putative [Ricinus communis]
2 Hb_000230_310 0.1525182466 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
3 Hb_071116_010 0.1567645818 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
4 Hb_000553_070 0.167612015 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X2 [Jatropha curcas]
5 Hb_001862_080 0.2371103514 - - hypothetical protein RCOM_1154950 [Ricinus communis]
6 Hb_034589_010 0.2501602287 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
7 Hb_002228_130 0.2678461695 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001628_060 0.2729298181 - - PREDICTED: beta-galactosidase 13-like isoform X2 [Jatropha curcas]
9 Hb_002675_210 0.2755185333 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
10 Hb_045985_010 0.2870894171 - - hypothetical protein JCGZ_00291 [Jatropha curcas]
11 Hb_152640_010 0.2942661426 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
12 Hb_002805_100 0.3001772784 - - Receptor-like protein 12 [Morus notabilis]
13 Hb_000302_070 0.3063896429 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
14 Hb_168241_010 0.3066412162 - - hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
15 Hb_002217_410 0.3091615793 - - hypothetical protein L484_027883 [Morus notabilis]
16 Hb_000104_070 0.3221317592 - - PREDICTED: citrate-binding protein-like [Jatropha curcas]
17 Hb_005181_200 0.3223030838 transcription factor TF Family: GRAS PREDICTED: DELLA protein RGL1-like [Jatropha curcas]
18 Hb_006973_060 0.3274650602 - - Uncharacterized protein TCM_038475 [Theobroma cacao]
19 Hb_000556_030 0.3283472488 - - PREDICTED: probable carboxylesterase 9 [Jatropha curcas]
20 Hb_000988_010 0.3361685885 - - hypothetical protein POPTR_0004s17730g [Populus trichocarpa]

Gene co-expression network

sample Hb_002740_070 Hb_002740_070 Hb_000230_310 Hb_000230_310 Hb_002740_070--Hb_000230_310 Hb_071116_010 Hb_071116_010 Hb_002740_070--Hb_071116_010 Hb_000553_070 Hb_000553_070 Hb_002740_070--Hb_000553_070 Hb_001862_080 Hb_001862_080 Hb_002740_070--Hb_001862_080 Hb_034589_010 Hb_034589_010 Hb_002740_070--Hb_034589_010 Hb_002228_130 Hb_002228_130 Hb_002740_070--Hb_002228_130 Hb_000230_310--Hb_034589_010 Hb_000230_310--Hb_071116_010 Hb_002217_410 Hb_002217_410 Hb_000230_310--Hb_002217_410 Hb_000230_310--Hb_000553_070 Hb_000104_070 Hb_000104_070 Hb_000230_310--Hb_000104_070 Hb_168241_010 Hb_168241_010 Hb_071116_010--Hb_168241_010 Hb_001628_060 Hb_001628_060 Hb_071116_010--Hb_001628_060 Hb_000556_030 Hb_000556_030 Hb_071116_010--Hb_000556_030 Hb_184109_010 Hb_184109_010 Hb_071116_010--Hb_184109_010 Hb_007017_050 Hb_007017_050 Hb_071116_010--Hb_007017_050 Hb_176082_010 Hb_176082_010 Hb_000553_070--Hb_176082_010 Hb_102748_010 Hb_102748_010 Hb_000553_070--Hb_102748_010 Hb_148777_020 Hb_148777_020 Hb_000553_070--Hb_148777_020 Hb_003517_030 Hb_003517_030 Hb_000553_070--Hb_003517_030 Hb_000046_530 Hb_000046_530 Hb_000553_070--Hb_000046_530 Hb_045985_010 Hb_045985_010 Hb_001862_080--Hb_045985_010 Hb_000988_010 Hb_000988_010 Hb_001862_080--Hb_000988_010 Hb_001862_080--Hb_002217_410 Hb_002805_100 Hb_002805_100 Hb_001862_080--Hb_002805_100 Hb_006615_110 Hb_006615_110 Hb_001862_080--Hb_006615_110 Hb_002675_210 Hb_002675_210 Hb_001862_080--Hb_002675_210 Hb_034589_010--Hb_002217_410 Hb_034589_010--Hb_000104_070 Hb_034589_010--Hb_071116_010 Hb_006973_060 Hb_006973_060 Hb_034589_010--Hb_006973_060 Hb_002228_130--Hb_001628_060 Hb_152640_010 Hb_152640_010 Hb_002228_130--Hb_152640_010 Hb_015175_060 Hb_015175_060 Hb_002228_130--Hb_015175_060 Hb_000330_010 Hb_000330_010 Hb_002228_130--Hb_000330_010 Hb_086639_110 Hb_086639_110 Hb_002228_130--Hb_086639_110 Hb_000107_690 Hb_000107_690 Hb_002228_130--Hb_000107_690
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0216617 0.0448114 0.027331 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis