Hb_102748_010

Information

Type -
Description -
Location Contig102748: 30-650
Sequence    

Annotation

kegg
ID pda:103696607
description uncharacterized LOC103696607
nr
ID XP_008776509.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID A5B3J2
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040272 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102748_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
2 Hb_000046_530 0.0314297481 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF086 [Jatropha curcas]
3 Hb_000640_180 0.0395015063 - - enzyme inhibitor, putative [Ricinus communis]
4 Hb_000563_580 0.0465854149 - - acyltransferase, putative [Ricinus communis]
5 Hb_176082_010 0.124393018 - - PREDICTED: pirin-like protein [Jatropha curcas]
6 Hb_143629_160 0.1344460658 - - nitrate transporter, putative [Ricinus communis]
7 Hb_148777_020 0.1618723616 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 isoform X1 [Populus euphratica]
8 Hb_003517_030 0.1851144163 - - PREDICTED: putative glycerol-3-phosphate transporter 5 isoform X2 [Eucalyptus grandis]
9 Hb_000553_070 0.2276926472 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X2 [Jatropha curcas]
10 Hb_012366_010 0.2744755038 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
11 Hb_089785_010 0.2823563846 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Fragaria vesca subsp. vesca]
12 Hb_005654_020 0.3379123079 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
13 Hb_066415_010 0.3397034721 - - -
14 Hb_000679_160 0.345954591 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
15 Hb_009815_010 0.3544839916 - - -
16 Hb_001157_070 0.3624198995 - - -
17 Hb_002740_070 0.36567045 - - nitrate transporter, putative [Ricinus communis]
18 Hb_000009_490 0.3671811118 - - hypothetical protein POPTR_0007s12040g [Populus trichocarpa]
19 Hb_001823_080 0.3827314915 - - hypothetical protein VITISV_012142 [Vitis vinifera]
20 Hb_145708_010 0.3931889189 - - PREDICTED: transcription factor ILR3-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_102748_010 Hb_102748_010 Hb_000046_530 Hb_000046_530 Hb_102748_010--Hb_000046_530 Hb_000640_180 Hb_000640_180 Hb_102748_010--Hb_000640_180 Hb_000563_580 Hb_000563_580 Hb_102748_010--Hb_000563_580 Hb_176082_010 Hb_176082_010 Hb_102748_010--Hb_176082_010 Hb_143629_160 Hb_143629_160 Hb_102748_010--Hb_143629_160 Hb_148777_020 Hb_148777_020 Hb_102748_010--Hb_148777_020 Hb_000046_530--Hb_000640_180 Hb_000046_530--Hb_000563_580 Hb_000046_530--Hb_143629_160 Hb_000046_530--Hb_176082_010 Hb_000046_530--Hb_148777_020 Hb_000640_180--Hb_000563_580 Hb_000640_180--Hb_143629_160 Hb_000640_180--Hb_176082_010 Hb_000640_180--Hb_148777_020 Hb_000563_580--Hb_143629_160 Hb_000563_580--Hb_176082_010 Hb_000563_580--Hb_148777_020 Hb_176082_010--Hb_148777_020 Hb_003517_030 Hb_003517_030 Hb_176082_010--Hb_003517_030 Hb_012366_010 Hb_012366_010 Hb_176082_010--Hb_012366_010 Hb_089785_010 Hb_089785_010 Hb_176082_010--Hb_089785_010 Hb_143629_160--Hb_176082_010 Hb_066415_010 Hb_066415_010 Hb_143629_160--Hb_066415_010 Hb_148777_020--Hb_003517_030 Hb_148777_020--Hb_012366_010 Hb_148777_020--Hb_089785_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0440319 0.0416432 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis