Hb_003517_030

Information

Type -
Description -
Location Contig3517: 46564-48793
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12290g
description POPTRDRAFT_911228; glycerol-3-phosphate transporter family protein
nr
ID XP_010049894.1
description PREDICTED: putative glycerol-3-phosphate transporter 5 isoform X2 [Eucalyptus grandis]
swissprot
ID Q9SL56
description Putative glycerol-3-phosphate transporter 5 OS=Arabidopsis thaliana GN=At2g13100 PE=2 SV=2
trembl
ID B9IML0
description Glycerol-3-phosphate transporter family protein OS=Populus trichocarpa GN=POPTR_0018s12290g PE=4 SV=1
Gene Ontology
ID GO:0016021
description abc transporter c family member 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003517_030 0.0 - - PREDICTED: putative glycerol-3-phosphate transporter 5 isoform X2 [Eucalyptus grandis]
2 Hb_148777_020 0.0235337428 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 isoform X1 [Populus euphratica]
3 Hb_176082_010 0.0612864877 - - PREDICTED: pirin-like protein [Jatropha curcas]
4 Hb_012366_010 0.0915216397 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
5 Hb_089785_010 0.0996851121 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Fragaria vesca subsp. vesca]
6 Hb_001157_070 0.1836991998 - - -
7 Hb_102748_010 0.1851144163 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
8 Hb_000009_490 0.1887664391 - - hypothetical protein POPTR_0007s12040g [Populus trichocarpa]
9 Hb_000046_530 0.21608864 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF086 [Jatropha curcas]
10 Hb_000640_180 0.2240245142 - - enzyme inhibitor, putative [Ricinus communis]
11 Hb_000563_580 0.2309828702 - - acyltransferase, putative [Ricinus communis]
12 Hb_000553_070 0.2381770845 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X2 [Jatropha curcas]
13 Hb_004208_120 0.2606144203 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
14 Hb_152640_010 0.2700425988 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
15 Hb_000367_040 0.2721884862 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
16 Hb_001205_270 0.2830942346 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
17 Hb_000702_050 0.2867773988 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
18 Hb_004531_180 0.2886376442 - - nitrate transporter, putative [Ricinus communis]
19 Hb_000679_160 0.2974982473 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
20 Hb_052640_010 0.3088180745 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003517_030 Hb_003517_030 Hb_148777_020 Hb_148777_020 Hb_003517_030--Hb_148777_020 Hb_176082_010 Hb_176082_010 Hb_003517_030--Hb_176082_010 Hb_012366_010 Hb_012366_010 Hb_003517_030--Hb_012366_010 Hb_089785_010 Hb_089785_010 Hb_003517_030--Hb_089785_010 Hb_001157_070 Hb_001157_070 Hb_003517_030--Hb_001157_070 Hb_102748_010 Hb_102748_010 Hb_003517_030--Hb_102748_010 Hb_148777_020--Hb_176082_010 Hb_148777_020--Hb_012366_010 Hb_148777_020--Hb_089785_010 Hb_148777_020--Hb_102748_010 Hb_000046_530 Hb_000046_530 Hb_148777_020--Hb_000046_530 Hb_176082_010--Hb_102748_010 Hb_176082_010--Hb_012366_010 Hb_176082_010--Hb_000046_530 Hb_176082_010--Hb_089785_010 Hb_012366_010--Hb_089785_010 Hb_012366_010--Hb_001157_070 Hb_000009_490 Hb_000009_490 Hb_012366_010--Hb_000009_490 Hb_089785_010--Hb_001157_070 Hb_089785_010--Hb_000009_490 Hb_001157_070--Hb_000009_490 Hb_000702_050 Hb_000702_050 Hb_001157_070--Hb_000702_050 Hb_000367_040 Hb_000367_040 Hb_001157_070--Hb_000367_040 Hb_102748_010--Hb_000046_530 Hb_000640_180 Hb_000640_180 Hb_102748_010--Hb_000640_180 Hb_000563_580 Hb_000563_580 Hb_102748_010--Hb_000563_580 Hb_143629_160 Hb_143629_160 Hb_102748_010--Hb_143629_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.156078 0.059334 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis