Hb_089785_010

Information

Type -
Description -
Location Contig89785: 76-612
Sequence    

Annotation

kegg
ID rcu:RCOM_0592550
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_011470626.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Fragaria vesca subsp. vesca]
swissprot
ID C0LGT6
description LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1
trembl
ID B9SLK8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0592550 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089785_010 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Fragaria vesca subsp. vesca]
2 Hb_012366_010 0.0082154575 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
3 Hb_001157_070 0.0852868681 - - -
4 Hb_000009_490 0.0904818663 - - hypothetical protein POPTR_0007s12040g [Populus trichocarpa]
5 Hb_003517_030 0.0996851121 - - PREDICTED: putative glycerol-3-phosphate transporter 5 isoform X2 [Eucalyptus grandis]
6 Hb_148777_020 0.1230516535 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 isoform X1 [Populus euphratica]
7 Hb_176082_010 0.1604336737 - - PREDICTED: pirin-like protein [Jatropha curcas]
8 Hb_000702_050 0.1925769892 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
9 Hb_000367_040 0.2110224889 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
10 Hb_004208_120 0.2127671864 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
11 Hb_152640_010 0.2239369696 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
12 Hb_001205_270 0.2451124882 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
13 Hb_004531_180 0.2510597489 - - nitrate transporter, putative [Ricinus communis]
14 Hb_102748_010 0.2823563846 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
15 Hb_052640_010 0.2848225727 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
16 Hb_017862_040 0.2933811884 - - PREDICTED: pleiotropic drug resistance protein 3-like [Prunus mume]
17 Hb_000553_070 0.2935316321 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X2 [Jatropha curcas]
18 Hb_050786_010 0.3002786213 - - hypothetical protein MIMGU_mgv1a014824mg [Erythranthe guttata]
19 Hb_002686_100 0.3021520166 - - -
20 Hb_000002_190 0.3082142098 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]

Gene co-expression network

sample Hb_089785_010 Hb_089785_010 Hb_012366_010 Hb_012366_010 Hb_089785_010--Hb_012366_010 Hb_001157_070 Hb_001157_070 Hb_089785_010--Hb_001157_070 Hb_000009_490 Hb_000009_490 Hb_089785_010--Hb_000009_490 Hb_003517_030 Hb_003517_030 Hb_089785_010--Hb_003517_030 Hb_148777_020 Hb_148777_020 Hb_089785_010--Hb_148777_020 Hb_176082_010 Hb_176082_010 Hb_089785_010--Hb_176082_010 Hb_012366_010--Hb_003517_030 Hb_012366_010--Hb_001157_070 Hb_012366_010--Hb_000009_490 Hb_012366_010--Hb_148777_020 Hb_012366_010--Hb_176082_010 Hb_001157_070--Hb_000009_490 Hb_000702_050 Hb_000702_050 Hb_001157_070--Hb_000702_050 Hb_001157_070--Hb_003517_030 Hb_000367_040 Hb_000367_040 Hb_001157_070--Hb_000367_040 Hb_000009_490--Hb_000702_050 Hb_000009_490--Hb_000367_040 Hb_000009_490--Hb_003517_030 Hb_003517_030--Hb_148777_020 Hb_003517_030--Hb_176082_010 Hb_102748_010 Hb_102748_010 Hb_003517_030--Hb_102748_010 Hb_148777_020--Hb_176082_010 Hb_148777_020--Hb_102748_010 Hb_000046_530 Hb_000046_530 Hb_148777_020--Hb_000046_530 Hb_176082_010--Hb_102748_010 Hb_176082_010--Hb_000046_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.239454 0.0516761 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis