Hb_000009_490

Information

Type -
Description -
Location Contig9: 489289-490180
Sequence    

Annotation

kegg
ID pop:POPTR_0007s12040g
description hypothetical protein
nr
ID XP_006380738.1
description hypothetical protein POPTR_0007s12040g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G557
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_490 0.0 - - hypothetical protein POPTR_0007s12040g [Populus trichocarpa]
2 Hb_001157_070 0.0052437499 - - -
3 Hb_089785_010 0.0904818663 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Fragaria vesca subsp. vesca]
4 Hb_012366_010 0.09862511 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
5 Hb_000702_050 0.10493695 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
6 Hb_000367_040 0.1831711068 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
7 Hb_003517_030 0.1887664391 - - PREDICTED: putative glycerol-3-phosphate transporter 5 isoform X2 [Eucalyptus grandis]
8 Hb_004208_120 0.2021239133 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
9 Hb_148777_020 0.2116771733 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 isoform X1 [Populus euphratica]
10 Hb_152640_010 0.2133401897 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
11 Hb_050786_010 0.2276903725 - - hypothetical protein MIMGU_mgv1a014824mg [Erythranthe guttata]
12 Hb_000002_190 0.2322716744 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
13 Hb_000003_520 0.2322716744 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
14 Hb_000005_170 0.2322716744 transcription factor TF Family: bHLH PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Jatropha curcas]
15 Hb_000009_230 0.2322716744 - - hypothetical protein POPTR_0007s12290g [Populus trichocarpa]
16 Hb_000011_110 0.2322716744 - - PREDICTED: uncharacterized protein LOC105631299 [Jatropha curcas]
17 Hb_000012_390 0.2322716744 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000018_070 0.2322716744 - - PREDICTED: amino acid permease 8-like [Jatropha curcas]
19 Hb_000020_130 0.2322716744 - - conidial pigment biosynthesis oxidase Arb2/brown2 [Aspergillus clavatus NRRL 1]
20 Hb_000024_090 0.2322716744 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000009_490 Hb_000009_490 Hb_001157_070 Hb_001157_070 Hb_000009_490--Hb_001157_070 Hb_089785_010 Hb_089785_010 Hb_000009_490--Hb_089785_010 Hb_012366_010 Hb_012366_010 Hb_000009_490--Hb_012366_010 Hb_000702_050 Hb_000702_050 Hb_000009_490--Hb_000702_050 Hb_000367_040 Hb_000367_040 Hb_000009_490--Hb_000367_040 Hb_003517_030 Hb_003517_030 Hb_000009_490--Hb_003517_030 Hb_001157_070--Hb_089785_010 Hb_001157_070--Hb_012366_010 Hb_001157_070--Hb_000702_050 Hb_001157_070--Hb_003517_030 Hb_001157_070--Hb_000367_040 Hb_089785_010--Hb_012366_010 Hb_089785_010--Hb_003517_030 Hb_148777_020 Hb_148777_020 Hb_089785_010--Hb_148777_020 Hb_176082_010 Hb_176082_010 Hb_089785_010--Hb_176082_010 Hb_012366_010--Hb_003517_030 Hb_012366_010--Hb_148777_020 Hb_012366_010--Hb_176082_010 Hb_000002_190 Hb_000002_190 Hb_000702_050--Hb_000002_190 Hb_000003_520 Hb_000003_520 Hb_000702_050--Hb_000003_520 Hb_000005_170 Hb_000005_170 Hb_000702_050--Hb_000005_170 Hb_000009_230 Hb_000009_230 Hb_000702_050--Hb_000009_230 Hb_001205_270 Hb_001205_270 Hb_000367_040--Hb_001205_270 Hb_000367_040--Hb_000702_050 Hb_020712_020 Hb_020712_020 Hb_000367_040--Hb_020712_020 Hb_025526_110 Hb_025526_110 Hb_000367_040--Hb_025526_110 Hb_003517_030--Hb_148777_020 Hb_003517_030--Hb_176082_010 Hb_102748_010 Hb_102748_010 Hb_003517_030--Hb_102748_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 2.22593 0.257811 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis