Hb_001205_270

Information

Type -
Description -
Location Contig1205: 182364-183705
Sequence    

Annotation

kegg
ID cic:CICLE_v10027476mg
description hypothetical protein
nr
ID XP_012084472.1
description PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JUC5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20029 PE=4 SV=1
Gene Ontology
ID GO:0005634
description spindle assembly abnormal protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_270 0.0 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
2 Hb_000367_040 0.1917546339 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
3 Hb_004531_180 0.1990393796 - - nitrate transporter, putative [Ricinus communis]
4 Hb_001157_070 0.2398228346 - - -
5 Hb_000009_490 0.2404275051 - - hypothetical protein POPTR_0007s12040g [Populus trichocarpa]
6 Hb_089785_010 0.2451124882 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Fragaria vesca subsp. vesca]
7 Hb_012366_010 0.2470732132 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
8 Hb_005723_060 0.2559914865 - - -
9 Hb_000702_050 0.2728643192 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
10 Hb_099990_020 0.2823964463 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
11 Hb_003517_030 0.2830942346 - - PREDICTED: putative glycerol-3-phosphate transporter 5 isoform X2 [Eucalyptus grandis]
12 Hb_005914_220 0.2846264327 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
13 Hb_004705_090 0.2848256553 - - conserved hypothetical protein [Ricinus communis]
14 Hb_104362_010 0.2857670848 - - hypothetical protein POPTR_0247s002302g, partial [Populus trichocarpa]
15 Hb_000679_160 0.286466494 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
16 Hb_002368_120 0.2879493022 - - hypothetical protein VITISV_033181 [Vitis vinifera]
17 Hb_000733_260 0.2898335004 - - hypothetical protein JCGZ_26934 [Jatropha curcas]
18 Hb_148777_020 0.2957375822 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 isoform X1 [Populus euphratica]
19 Hb_003494_100 0.2958118037 transcription factor TF Family: zf-HD Mini zinc finger 2 isoform 1 [Theobroma cacao]
20 Hb_000237_010 0.2963117088 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001205_270 Hb_001205_270 Hb_000367_040 Hb_000367_040 Hb_001205_270--Hb_000367_040 Hb_004531_180 Hb_004531_180 Hb_001205_270--Hb_004531_180 Hb_001157_070 Hb_001157_070 Hb_001205_270--Hb_001157_070 Hb_000009_490 Hb_000009_490 Hb_001205_270--Hb_000009_490 Hb_089785_010 Hb_089785_010 Hb_001205_270--Hb_089785_010 Hb_012366_010 Hb_012366_010 Hb_001205_270--Hb_012366_010 Hb_000367_040--Hb_000009_490 Hb_000367_040--Hb_001157_070 Hb_000702_050 Hb_000702_050 Hb_000367_040--Hb_000702_050 Hb_020712_020 Hb_020712_020 Hb_000367_040--Hb_020712_020 Hb_025526_110 Hb_025526_110 Hb_000367_040--Hb_025526_110 Hb_005723_060 Hb_005723_060 Hb_004531_180--Hb_005723_060 Hb_000893_010 Hb_000893_010 Hb_004531_180--Hb_000893_010 Hb_005914_220 Hb_005914_220 Hb_004531_180--Hb_005914_220 Hb_000521_070 Hb_000521_070 Hb_004531_180--Hb_000521_070 Hb_004531_180--Hb_001157_070 Hb_001157_070--Hb_000009_490 Hb_001157_070--Hb_089785_010 Hb_001157_070--Hb_012366_010 Hb_001157_070--Hb_000702_050 Hb_003517_030 Hb_003517_030 Hb_001157_070--Hb_003517_030 Hb_000009_490--Hb_089785_010 Hb_000009_490--Hb_012366_010 Hb_000009_490--Hb_000702_050 Hb_000009_490--Hb_003517_030 Hb_089785_010--Hb_012366_010 Hb_089785_010--Hb_003517_030 Hb_148777_020 Hb_148777_020 Hb_089785_010--Hb_148777_020 Hb_176082_010 Hb_176082_010 Hb_089785_010--Hb_176082_010 Hb_012366_010--Hb_003517_030 Hb_012366_010--Hb_148777_020 Hb_012366_010--Hb_176082_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.252446 0.0370134 0.0212046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0142556 0

CAGE analysis