Hb_005723_060

Information

Type -
Description -
Location Contig5723: 104837-105052
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID K4CDD6
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc07g026920.1 PE=4 SV=1
Gene Ontology
ID GO:0016021
description hippocampus abundant transcript-like protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49388: 75180-107829
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005723_060 0.0 - - -
2 Hb_005914_220 0.2050340975 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
3 Hb_004531_180 0.2155748281 - - nitrate transporter, putative [Ricinus communis]
4 Hb_000733_260 0.2414753745 - - hypothetical protein JCGZ_26934 [Jatropha curcas]
5 Hb_000025_220 0.2430724964 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
6 Hb_000025_080 0.2507687926 - - -
7 Hb_001205_270 0.2559914865 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
8 Hb_000893_010 0.2579863011 - - PREDICTED: uncharacterized protein LOC105135422 [Populus euphratica]
9 Hb_000532_090 0.259439034 - - ATPase [delta proteobacterium MLMS-1]
10 Hb_005263_010 0.2639962304 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Nicotiana sylvestris]
11 Hb_063907_010 0.2689898133 - - -
12 Hb_001486_050 0.2714920492 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
13 Hb_000574_310 0.2824146454 - - hypothetical protein CISIN_1g027539mg [Citrus sinensis]
14 Hb_000172_470 0.2846439342 - - hypothetical protein POPTR_0005s08310g [Populus trichocarpa]
15 Hb_011381_090 0.2873149847 - - Protein ABC1, mitochondrial precursor, putative [Ricinus communis]
16 Hb_000139_110 0.2883193788 - - PREDICTED: mavicyanin [Jatropha curcas]
17 Hb_000164_200 0.2903248274 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
18 Hb_000500_070 0.2920230378 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
19 Hb_009803_010 0.2940955809 - - hypothetical protein JCGZ_08257 [Jatropha curcas]
20 Hb_003641_010 0.2943880181 - - Pectinesterase-3 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005723_060 Hb_005723_060 Hb_005914_220 Hb_005914_220 Hb_005723_060--Hb_005914_220 Hb_004531_180 Hb_004531_180 Hb_005723_060--Hb_004531_180 Hb_000733_260 Hb_000733_260 Hb_005723_060--Hb_000733_260 Hb_000025_220 Hb_000025_220 Hb_005723_060--Hb_000025_220 Hb_000025_080 Hb_000025_080 Hb_005723_060--Hb_000025_080 Hb_001205_270 Hb_001205_270 Hb_005723_060--Hb_001205_270 Hb_001396_270 Hb_001396_270 Hb_005914_220--Hb_001396_270 Hb_000042_120 Hb_000042_120 Hb_005914_220--Hb_000042_120 Hb_000156_150 Hb_000156_150 Hb_005914_220--Hb_000156_150 Hb_006012_030 Hb_006012_030 Hb_005914_220--Hb_006012_030 Hb_000389_130 Hb_000389_130 Hb_005914_220--Hb_000389_130 Hb_001428_010 Hb_001428_010 Hb_005914_220--Hb_001428_010 Hb_004531_180--Hb_001205_270 Hb_000893_010 Hb_000893_010 Hb_004531_180--Hb_000893_010 Hb_004531_180--Hb_005914_220 Hb_000521_070 Hb_000521_070 Hb_004531_180--Hb_000521_070 Hb_001157_070 Hb_001157_070 Hb_004531_180--Hb_001157_070 Hb_000164_200 Hb_000164_200 Hb_000733_260--Hb_000164_200 Hb_000574_310 Hb_000574_310 Hb_000733_260--Hb_000574_310 Hb_000733_260--Hb_000025_220 Hb_005263_010 Hb_005263_010 Hb_000733_260--Hb_005263_010 Hb_068804_170 Hb_068804_170 Hb_000733_260--Hb_068804_170 Hb_000085_120 Hb_000085_120 Hb_000733_260--Hb_000085_120 Hb_009803_010 Hb_009803_010 Hb_000025_220--Hb_009803_010 Hb_000025_220--Hb_005263_010 Hb_005368_030 Hb_005368_030 Hb_000025_220--Hb_005368_030 Hb_003641_010 Hb_003641_010 Hb_000025_220--Hb_003641_010 Hb_000025_220--Hb_000574_310 Hb_000953_120 Hb_000953_120 Hb_000025_080--Hb_000953_120 Hb_009119_010 Hb_009119_010 Hb_000025_080--Hb_009119_010 Hb_162090_010 Hb_162090_010 Hb_000025_080--Hb_162090_010 Hb_017014_020 Hb_017014_020 Hb_000025_080--Hb_017014_020 Hb_002016_030 Hb_002016_030 Hb_000025_080--Hb_002016_030 Hb_006794_010 Hb_006794_010 Hb_000025_080--Hb_006794_010 Hb_000367_040 Hb_000367_040 Hb_001205_270--Hb_000367_040 Hb_001205_270--Hb_001157_070 Hb_000009_490 Hb_000009_490 Hb_001205_270--Hb_000009_490 Hb_089785_010 Hb_089785_010 Hb_001205_270--Hb_089785_010 Hb_012366_010 Hb_012366_010 Hb_001205_270--Hb_012366_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9677 0 0.613534 184.119 11.5466 27.7429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.9306 0 0

CAGE analysis