Hb_000574_310

Information

Type -
Description -
Location Contig574: 315045-315319
Sequence    

Annotation

kegg
ID cit:102607132
description clustered mitochondria protein homolog
nr
ID KDO37323.1
description hypothetical protein CISIN_1g027539mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067D3E9
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027539mg PE=4 SV=1
Gene Ontology
ID GO:0005829
description clustered mitochondria protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49556: 309679-322135
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_310 0.0 - - hypothetical protein CISIN_1g027539mg [Citrus sinensis]
2 Hb_000733_260 0.1375820937 - - hypothetical protein JCGZ_26934 [Jatropha curcas]
3 Hb_000164_200 0.1558569108 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
4 Hb_001597_040 0.1807022246 - - -
5 Hb_001956_170 0.1816747207 - - hypothetical protein POPTR_0001s24950g [Populus trichocarpa]
6 Hb_007677_010 0.1840367102 - - PREDICTED: uncharacterized protein LOC105641028 [Jatropha curcas]
7 Hb_003925_010 0.185789929 - - Polygalacturonase precursor, putative [Ricinus communis]
8 Hb_000637_090 0.1877489591 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
9 Hb_005183_090 0.1883075493 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
10 Hb_103942_010 0.1918167284 - - rab5A-like protein [Trichinella spiralis]
11 Hb_009470_010 0.1966707587 - - -
12 Hb_009896_010 0.1970378457 - - ABC transporter G family member 15 [Morus notabilis]
13 Hb_002681_150 0.1982498035 - - uridine cytidine kinase I, putative [Ricinus communis]
14 Hb_002186_190 0.199374013 - - -
15 Hb_008493_020 0.2039070209 - - linamarase [Manihot esculenta]
16 Hb_053058_010 0.2069725514 - - conserved hypothetical protein [Ricinus communis]
17 Hb_068804_170 0.2082480155 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
18 Hb_050786_010 0.2083339187 - - hypothetical protein MIMGU_mgv1a014824mg [Erythranthe guttata]
19 Hb_000617_070 0.2085899301 - - hypothetical protein POPTR_0005s02420g [Populus trichocarpa]
20 Hb_001634_070 0.2088316457 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000574_310 Hb_000574_310 Hb_000733_260 Hb_000733_260 Hb_000574_310--Hb_000733_260 Hb_000164_200 Hb_000164_200 Hb_000574_310--Hb_000164_200 Hb_001597_040 Hb_001597_040 Hb_000574_310--Hb_001597_040 Hb_001956_170 Hb_001956_170 Hb_000574_310--Hb_001956_170 Hb_007677_010 Hb_007677_010 Hb_000574_310--Hb_007677_010 Hb_003925_010 Hb_003925_010 Hb_000574_310--Hb_003925_010 Hb_000733_260--Hb_000164_200 Hb_000025_220 Hb_000025_220 Hb_000733_260--Hb_000025_220 Hb_005263_010 Hb_005263_010 Hb_000733_260--Hb_005263_010 Hb_068804_170 Hb_068804_170 Hb_000733_260--Hb_068804_170 Hb_000085_120 Hb_000085_120 Hb_000733_260--Hb_000085_120 Hb_000164_200--Hb_068804_170 Hb_000002_190 Hb_000002_190 Hb_000164_200--Hb_000002_190 Hb_000003_520 Hb_000003_520 Hb_000164_200--Hb_000003_520 Hb_000005_170 Hb_000005_170 Hb_000164_200--Hb_000005_170 Hb_000009_230 Hb_000009_230 Hb_000164_200--Hb_000009_230 Hb_000011_110 Hb_000011_110 Hb_000164_200--Hb_000011_110 Hb_053058_010 Hb_053058_010 Hb_001597_040--Hb_053058_010 Hb_001634_070 Hb_001634_070 Hb_001597_040--Hb_001634_070 Hb_050786_010 Hb_050786_010 Hb_001597_040--Hb_050786_010 Hb_009896_010 Hb_009896_010 Hb_001597_040--Hb_009896_010 Hb_008493_020 Hb_008493_020 Hb_001597_040--Hb_008493_020 Hb_002186_190 Hb_002186_190 Hb_001597_040--Hb_002186_190 Hb_001956_170--Hb_007677_010 Hb_000637_090 Hb_000637_090 Hb_001956_170--Hb_000637_090 Hb_001956_170--Hb_009896_010 Hb_009470_010 Hb_009470_010 Hb_001956_170--Hb_009470_010 Hb_001956_170--Hb_003925_010 Hb_001956_170--Hb_002186_190 Hb_007677_010--Hb_000637_090 Hb_007677_010--Hb_009470_010 Hb_007677_010--Hb_003925_010 Hb_007677_010--Hb_009896_010 Hb_007677_010--Hb_002186_190 Hb_000485_050 Hb_000485_050 Hb_003925_010--Hb_000485_050 Hb_003925_010--Hb_000637_090 Hb_027472_250 Hb_027472_250 Hb_003925_010--Hb_027472_250 Hb_004162_150 Hb_004162_150 Hb_003925_010--Hb_004162_150 Hb_000429_070 Hb_000429_070 Hb_003925_010--Hb_000429_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 435.582 0 30.0882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 16.7481

CAGE analysis