Hb_000733_260

Information

Type -
Description -
Location Contig733: 219154-219776
Sequence    

Annotation

kegg
ID vvi:100263841
description ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
nr
ID KDP41916.1
description hypothetical protein JCGZ_26934 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L0D2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26934 PE=4 SV=1
Gene Ontology
ID GO:0009535
description ribulose bisphosphate carboxylase oxygenase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000733_260 0.0 - - hypothetical protein JCGZ_26934 [Jatropha curcas]
2 Hb_000164_200 0.1185766457 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
3 Hb_000574_310 0.1375820937 - - hypothetical protein CISIN_1g027539mg [Citrus sinensis]
4 Hb_000025_220 0.1380987131 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
5 Hb_005263_010 0.1825809238 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Nicotiana sylvestris]
6 Hb_068804_170 0.1941562436 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
7 Hb_000085_120 0.1954236811 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
8 Hb_005914_220 0.2109836418 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
9 Hb_000002_190 0.2128792366 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
10 Hb_000003_520 0.2128792366 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
11 Hb_000005_170 0.2128792366 transcription factor TF Family: bHLH PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Jatropha curcas]
12 Hb_000009_230 0.2128792366 - - hypothetical protein POPTR_0007s12290g [Populus trichocarpa]
13 Hb_000011_110 0.2128792366 - - PREDICTED: uncharacterized protein LOC105631299 [Jatropha curcas]
14 Hb_000012_390 0.2128792366 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000018_070 0.2128792366 - - PREDICTED: amino acid permease 8-like [Jatropha curcas]
16 Hb_000020_130 0.2128792366 - - conidial pigment biosynthesis oxidase Arb2/brown2 [Aspergillus clavatus NRRL 1]
17 Hb_000024_090 0.2128792366 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000025_560 0.2128792366 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_000028_310 0.2128792366 - - PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
20 Hb_000037_140 0.2128792366 - - PREDICTED: uncharacterized protein LOC104586896 [Nelumbo nucifera]

Gene co-expression network

sample Hb_000733_260 Hb_000733_260 Hb_000164_200 Hb_000164_200 Hb_000733_260--Hb_000164_200 Hb_000574_310 Hb_000574_310 Hb_000733_260--Hb_000574_310 Hb_000025_220 Hb_000025_220 Hb_000733_260--Hb_000025_220 Hb_005263_010 Hb_005263_010 Hb_000733_260--Hb_005263_010 Hb_068804_170 Hb_068804_170 Hb_000733_260--Hb_068804_170 Hb_000085_120 Hb_000085_120 Hb_000733_260--Hb_000085_120 Hb_000164_200--Hb_068804_170 Hb_000002_190 Hb_000002_190 Hb_000164_200--Hb_000002_190 Hb_000003_520 Hb_000003_520 Hb_000164_200--Hb_000003_520 Hb_000005_170 Hb_000005_170 Hb_000164_200--Hb_000005_170 Hb_000009_230 Hb_000009_230 Hb_000164_200--Hb_000009_230 Hb_000011_110 Hb_000011_110 Hb_000164_200--Hb_000011_110 Hb_000574_310--Hb_000164_200 Hb_001597_040 Hb_001597_040 Hb_000574_310--Hb_001597_040 Hb_001956_170 Hb_001956_170 Hb_000574_310--Hb_001956_170 Hb_007677_010 Hb_007677_010 Hb_000574_310--Hb_007677_010 Hb_003925_010 Hb_003925_010 Hb_000574_310--Hb_003925_010 Hb_009803_010 Hb_009803_010 Hb_000025_220--Hb_009803_010 Hb_000025_220--Hb_005263_010 Hb_005368_030 Hb_005368_030 Hb_000025_220--Hb_005368_030 Hb_003641_010 Hb_003641_010 Hb_000025_220--Hb_003641_010 Hb_000025_220--Hb_000574_310 Hb_005263_010--Hb_005368_030 Hb_182507_010 Hb_182507_010 Hb_005263_010--Hb_182507_010 Hb_001660_140 Hb_001660_140 Hb_005263_010--Hb_001660_140 Hb_005263_010--Hb_009803_010 Hb_013040_010 Hb_013040_010 Hb_005263_010--Hb_013040_010 Hb_068804_170--Hb_000002_190 Hb_068804_170--Hb_000003_520 Hb_068804_170--Hb_000005_170 Hb_068804_170--Hb_000009_230 Hb_068804_170--Hb_000011_110 Hb_000012_390 Hb_000012_390 Hb_068804_170--Hb_000012_390 Hb_000085_120--Hb_003641_010 Hb_005183_090 Hb_005183_090 Hb_000085_120--Hb_005183_090 Hb_015085_010 Hb_015085_010 Hb_000085_120--Hb_015085_010 Hb_125152_010 Hb_125152_010 Hb_000085_120--Hb_125152_010 Hb_000048_120 Hb_000048_120 Hb_000085_120--Hb_000048_120 Hb_009501_010 Hb_009501_010 Hb_000085_120--Hb_009501_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 3.18106 0 0.305915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis