Hb_005183_090

Information

Type -
Description -
Location Contig5183: 71456-71662
Sequence    

Annotation

kegg
ID tcc:TCM_033849
description Calcium-binding EF-hand family protein, putative
nr
ID XP_007017256.1
description Calcium-binding EF-hand family protein, putative [Theobroma cacao]
swissprot
ID O22845
description Calmodulin-like protein 5 OS=Arabidopsis thaliana GN=CML5 PE=2 SV=2
trembl
ID A0A061FBR4
description Calcium-binding EF-hand family protein, putative OS=Theobroma cacao GN=TCM_033849 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding ef-hand family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005183_090 0.0 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
2 Hb_003607_040 0.1000836431 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
3 Hb_103942_020 0.1003676991 - - unknown [Zea mays]
4 Hb_029508_050 0.1004260876 - - PREDICTED: mechanosensitive ion channel protein 10-like isoform X2 [Musa acuminata subsp. malaccensis]
5 Hb_007441_320 0.100924895 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
6 Hb_006061_020 0.1083180139 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
7 Hb_001454_030 0.1106512522 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
8 Hb_000358_070 0.1106989906 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
9 Hb_006452_080 0.1109588858 - - Nodulin, putative [Ricinus communis]
10 Hb_000201_060 0.1134384201 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X2 [Populus euphratica]
11 Hb_001123_080 0.1163153717 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011689_090 0.1180610861 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
13 Hb_001597_040 0.1187621102 - - -
14 Hb_000628_080 0.1204884581 - - hypothetical protein JCGZ_04283 [Jatropha curcas]
15 Hb_000331_660 0.1207683233 - - PREDICTED: vignain [Jatropha curcas]
16 Hb_116679_010 0.1212849916 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
17 Hb_000527_090 0.1213433668 - - serine carboxypeptidase, putative [Ricinus communis]
18 Hb_000012_340 0.1217175854 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
19 Hb_006275_080 0.1224757958 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
20 Hb_003090_250 0.1231826178 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_005183_090 Hb_005183_090 Hb_003607_040 Hb_003607_040 Hb_005183_090--Hb_003607_040 Hb_103942_020 Hb_103942_020 Hb_005183_090--Hb_103942_020 Hb_029508_050 Hb_029508_050 Hb_005183_090--Hb_029508_050 Hb_007441_320 Hb_007441_320 Hb_005183_090--Hb_007441_320 Hb_006061_020 Hb_006061_020 Hb_005183_090--Hb_006061_020 Hb_001454_030 Hb_001454_030 Hb_005183_090--Hb_001454_030 Hb_002215_020 Hb_002215_020 Hb_003607_040--Hb_002215_020 Hb_116679_010 Hb_116679_010 Hb_003607_040--Hb_116679_010 Hb_000012_340 Hb_000012_340 Hb_003607_040--Hb_000012_340 Hb_000358_070 Hb_000358_070 Hb_003607_040--Hb_000358_070 Hb_000816_170 Hb_000816_170 Hb_003607_040--Hb_000816_170 Hb_003607_040--Hb_029508_050 Hb_103942_020--Hb_001454_030 Hb_103942_020--Hb_007441_320 Hb_000628_080 Hb_000628_080 Hb_103942_020--Hb_000628_080 Hb_103942_020--Hb_003607_040 Hb_103942_020--Hb_000012_340 Hb_002186_190 Hb_002186_190 Hb_103942_020--Hb_002186_190 Hb_029508_050--Hb_000358_070 Hb_000201_060 Hb_000201_060 Hb_029508_050--Hb_000201_060 Hb_006452_080 Hb_006452_080 Hb_029508_050--Hb_006452_080 Hb_003090_250 Hb_003090_250 Hb_029508_050--Hb_003090_250 Hb_007472_060 Hb_007472_060 Hb_029508_050--Hb_007472_060 Hb_007441_320--Hb_001454_030 Hb_007441_320--Hb_003607_040 Hb_000527_090 Hb_000527_090 Hb_007441_320--Hb_000527_090 Hb_120496_010 Hb_120496_010 Hb_007441_320--Hb_120496_010 Hb_007441_320--Hb_006452_080 Hb_000754_010 Hb_000754_010 Hb_006061_020--Hb_000754_010 Hb_006061_020--Hb_000201_060 Hb_006061_020--Hb_003090_250 Hb_004807_070 Hb_004807_070 Hb_006061_020--Hb_004807_070 Hb_006018_020 Hb_006018_020 Hb_006061_020--Hb_006018_020 Hb_006061_020--Hb_000358_070 Hb_001454_030--Hb_000628_080 Hb_001634_070 Hb_001634_070 Hb_001454_030--Hb_001634_070 Hb_001454_030--Hb_002186_190 Hb_001454_030--Hb_003607_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 21.8788 4.62258 556.497 0 9.20673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.94423 11.6348

CAGE analysis