Hb_000893_010

Information

Type -
Description -
Location Contig893: 41119-42648
Sequence    

Annotation

kegg
ID rcu:RCOM_0610260
description ammonium transporter, putative
nr
ID XP_011038587.1
description PREDICTED: uncharacterized protein LOC105135422 [Populus euphratica]
swissprot
ID O04161
description Ammonium transporter 1 member 2 OS=Solanum lycopersicum GN=AMT1-2 PE=2 SV=1
trembl
ID B9S7P3
description Ammonium transporter OS=Ricinus communis GN=RCOM_0610260 PE=3 SV=1
Gene Ontology
ID GO:0005886
description amt1 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61704: 42393-42604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000893_010 0.0 - - PREDICTED: uncharacterized protein LOC105135422 [Populus euphratica]
2 Hb_004705_090 0.214066491 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004531_180 0.216376551 - - nitrate transporter, putative [Ricinus communis]
4 Hb_104169_010 0.2187904638 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
5 Hb_072290_010 0.2209208805 - - PREDICTED: GRF1-interacting factor 1 [Gossypium raimondii]
6 Hb_006816_110 0.2216823466 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
7 Hb_000521_070 0.2232926427 - - PREDICTED: uncharacterized protein LOC105650323 [Jatropha curcas]
8 Hb_001269_570 0.2293105066 - - hypothetical protein POPTR_0001s03430g [Populus trichocarpa]
9 Hb_004525_080 0.2363812189 - - Sugar transporter ERD6-like 6 [Morus notabilis]
10 Hb_108216_030 0.237690652 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
11 Hb_097783_010 0.2381427084 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
12 Hb_001486_050 0.2405280861 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
13 Hb_099990_020 0.2452107989 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
14 Hb_007575_090 0.2525443755 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
15 Hb_000139_110 0.2533930012 - - PREDICTED: mavicyanin [Jatropha curcas]
16 Hb_001454_080 0.2554237835 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
17 Hb_005723_060 0.2579863011 - - -
18 Hb_000959_180 0.2596742565 - - hypothetical protein JCGZ_09448 [Jatropha curcas]
19 Hb_000365_040 0.2615234305 - - PREDICTED: uncharacterized protein LOC105649097 [Jatropha curcas]
20 Hb_000302_110 0.2620765033 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000893_010 Hb_000893_010 Hb_004705_090 Hb_004705_090 Hb_000893_010--Hb_004705_090 Hb_004531_180 Hb_004531_180 Hb_000893_010--Hb_004531_180 Hb_104169_010 Hb_104169_010 Hb_000893_010--Hb_104169_010 Hb_072290_010 Hb_072290_010 Hb_000893_010--Hb_072290_010 Hb_006816_110 Hb_006816_110 Hb_000893_010--Hb_006816_110 Hb_000521_070 Hb_000521_070 Hb_000893_010--Hb_000521_070 Hb_004705_090--Hb_104169_010 Hb_004705_090--Hb_072290_010 Hb_009411_030 Hb_009411_030 Hb_004705_090--Hb_009411_030 Hb_001269_570 Hb_001269_570 Hb_004705_090--Hb_001269_570 Hb_048183_010 Hb_048183_010 Hb_004705_090--Hb_048183_010 Hb_001205_270 Hb_001205_270 Hb_004531_180--Hb_001205_270 Hb_005723_060 Hb_005723_060 Hb_004531_180--Hb_005723_060 Hb_005914_220 Hb_005914_220 Hb_004531_180--Hb_005914_220 Hb_004531_180--Hb_000521_070 Hb_001157_070 Hb_001157_070 Hb_004531_180--Hb_001157_070 Hb_104169_010--Hb_072290_010 Hb_000365_040 Hb_000365_040 Hb_104169_010--Hb_000365_040 Hb_104169_010--Hb_009411_030 Hb_000860_030 Hb_000860_030 Hb_104169_010--Hb_000860_030 Hb_008536_030 Hb_008536_030 Hb_104169_010--Hb_008536_030 Hb_072290_010--Hb_048183_010 Hb_002984_020 Hb_002984_020 Hb_072290_010--Hb_002984_020 Hb_133648_010 Hb_133648_010 Hb_072290_010--Hb_133648_010 Hb_178711_010 Hb_178711_010 Hb_072290_010--Hb_178711_010 Hb_009486_030 Hb_009486_030 Hb_006816_110--Hb_009486_030 Hb_000500_070 Hb_000500_070 Hb_006816_110--Hb_000500_070 Hb_080081_010 Hb_080081_010 Hb_006816_110--Hb_080081_010 Hb_006816_110--Hb_000521_070 Hb_001486_050 Hb_001486_050 Hb_006816_110--Hb_001486_050 Hb_000172_470 Hb_000172_470 Hb_006816_110--Hb_000172_470 Hb_004925_030 Hb_004925_030 Hb_000521_070--Hb_004925_030 Hb_000302_110 Hb_000302_110 Hb_000521_070--Hb_000302_110 Hb_007741_090 Hb_007741_090 Hb_000521_070--Hb_007741_090 Hb_007575_090 Hb_007575_090 Hb_000521_070--Hb_007575_090 Hb_002030_190 Hb_002030_190 Hb_000521_070--Hb_002030_190 Hb_000206_270 Hb_000206_270 Hb_000521_070--Hb_000206_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.307131 0.652983 0.101904 5.29092 0.675456 0.73215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0305261 0 0 0.0383346 0.100568

CAGE analysis