Hb_080081_010

Information

Type -
Description -
Location Contig80081: 167-497
Sequence    

Annotation

kegg
ID fve:101302936
description NADP-dependent alkenal double bond reductase P1-like
nr
ID XP_004298866.1
description PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Fragaria vesca subsp. vesca]
swissprot
ID Q6WAU0
description (+)-pulegone reductase OS=Mentha piperita PE=1 SV=1
trembl
ID B9SER7
description Alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_0223350 PE=4 SV=1
Gene Ontology
ID GO:0008270
description 2-alkenal reductase (nadp(+)-dependent)-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080081_010 0.0 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Fragaria vesca subsp. vesca]
2 Hb_000244_140 0.1397160591 - - PREDICTED: cell wall / vacuolar inhibitor of fructosidase 2 [Jatropha curcas]
3 Hb_000092_050 0.1674520017 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
4 Hb_006816_110 0.1705769138 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
5 Hb_005479_050 0.181252758 - - -
6 Hb_000172_470 0.1935488408 - - hypothetical protein POPTR_0005s08310g [Populus trichocarpa]
7 Hb_000220_020 0.2049202811 - - hypothetical protein CICLE_v10017575mg [Citrus clementina]
8 Hb_074836_020 0.2089036141 - - unnamed protein product [Vitis vinifera]
9 Hb_001296_010 0.2134633962 - - conserved hypothetical protein [Ricinus communis]
10 Hb_009486_030 0.2174132587 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Jatropha curcas]
11 Hb_104169_010 0.2261053829 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
12 Hb_002030_190 0.2291534954 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000521_070 0.2293975499 - - PREDICTED: uncharacterized protein LOC105650323 [Jatropha curcas]
14 Hb_027411_030 0.2313105912 - - metal ion binding protein, putative [Ricinus communis]
15 Hb_099990_020 0.2316396743 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
16 Hb_000577_070 0.2337937358 - - -
17 Hb_001486_050 0.2342706834 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
18 Hb_005736_110 0.2347261421 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
19 Hb_000991_060 0.2366661923 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
20 Hb_000847_110 0.2382941499 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_080081_010 Hb_080081_010 Hb_000244_140 Hb_000244_140 Hb_080081_010--Hb_000244_140 Hb_000092_050 Hb_000092_050 Hb_080081_010--Hb_000092_050 Hb_006816_110 Hb_006816_110 Hb_080081_010--Hb_006816_110 Hb_005479_050 Hb_005479_050 Hb_080081_010--Hb_005479_050 Hb_000172_470 Hb_000172_470 Hb_080081_010--Hb_000172_470 Hb_000220_020 Hb_000220_020 Hb_080081_010--Hb_000220_020 Hb_000244_140--Hb_000092_050 Hb_000577_070 Hb_000577_070 Hb_000244_140--Hb_000577_070 Hb_000244_140--Hb_000172_470 Hb_074836_020 Hb_074836_020 Hb_000244_140--Hb_074836_020 Hb_000244_140--Hb_005479_050 Hb_000092_050--Hb_000172_470 Hb_000092_050--Hb_000577_070 Hb_000010_040 Hb_000010_040 Hb_000092_050--Hb_000010_040 Hb_000025_220 Hb_000025_220 Hb_000092_050--Hb_000025_220 Hb_009486_030 Hb_009486_030 Hb_006816_110--Hb_009486_030 Hb_000500_070 Hb_000500_070 Hb_006816_110--Hb_000500_070 Hb_000521_070 Hb_000521_070 Hb_006816_110--Hb_000521_070 Hb_001486_050 Hb_001486_050 Hb_006816_110--Hb_001486_050 Hb_006816_110--Hb_000172_470 Hb_005479_050--Hb_001486_050 Hb_005479_050--Hb_006816_110 Hb_005479_050--Hb_000172_470 Hb_001335_040 Hb_001335_040 Hb_005479_050--Hb_001335_040 Hb_000172_470--Hb_000500_070 Hb_000172_470--Hb_000577_070 Hb_000172_470--Hb_074836_020 Hb_019299_020 Hb_019299_020 Hb_000220_020--Hb_019299_020 Hb_000139_460 Hb_000139_460 Hb_000220_020--Hb_000139_460 Hb_002304_110 Hb_002304_110 Hb_000220_020--Hb_002304_110 Hb_001616_010 Hb_001616_010 Hb_000220_020--Hb_001616_010 Hb_017061_010 Hb_017061_010 Hb_000220_020--Hb_017061_010 Hb_034713_010 Hb_034713_010 Hb_000220_020--Hb_034713_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.09739 18.6255 12.2106 350.667 0.798593 49.7264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.856525 0 0 25.1038 21.5271

CAGE analysis