Hb_000172_470

Information

Type -
Description -
Location Contig172: 544592-544859
Sequence    

Annotation

kegg
ID pop:POPTR_0005s08310g
description POPTRDRAFT_558589; hypothetical protein
nr
ID XP_002306335.2
description hypothetical protein POPTR_0005s08310g [Populus trichocarpa]
swissprot
ID Q9Y7K6
description Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=3 SV=1
trembl
ID B9H582
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s08310g PE=4 SV=2
Gene Ontology
ID GO:0008270
description probable e3 ubiquitin-protein ligase rha2b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 030_M22.ab1: 544352-545010

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_470 0.0 - - hypothetical protein POPTR_0005s08310g [Populus trichocarpa]
2 Hb_000500_070 0.1423160419 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
3 Hb_000244_140 0.1469731972 - - PREDICTED: cell wall / vacuolar inhibitor of fructosidase 2 [Jatropha curcas]
4 Hb_000577_070 0.1469942381 - - -
5 Hb_000092_050 0.1508856201 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
6 Hb_074836_020 0.1834170983 - - unnamed protein product [Vitis vinifera]
7 Hb_006816_110 0.1919612759 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
8 Hb_080081_010 0.1935488408 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Fragaria vesca subsp. vesca]
9 Hb_001486_050 0.2157355387 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
10 Hb_005479_050 0.2184202798 - - -
11 Hb_000140_300 0.2237860727 - - conserved hypothetical protein [Ricinus communis]
12 Hb_158296_010 0.224703635 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
13 Hb_000574_310 0.2313909361 - - hypothetical protein CISIN_1g027539mg [Citrus sinensis]
14 Hb_002681_150 0.2361676533 - - uridine cytidine kinase I, putative [Ricinus communis]
15 Hb_000025_220 0.2410589798 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
16 Hb_000139_110 0.2452349038 - - PREDICTED: mavicyanin [Jatropha curcas]
17 Hb_004884_050 0.2460966132 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
18 Hb_000521_070 0.2467961687 - - PREDICTED: uncharacterized protein LOC105650323 [Jatropha curcas]
19 Hb_000645_080 0.2495202849 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
20 Hb_000025_080 0.2530822924 - - -

Gene co-expression network

sample Hb_000172_470 Hb_000172_470 Hb_000500_070 Hb_000500_070 Hb_000172_470--Hb_000500_070 Hb_000244_140 Hb_000244_140 Hb_000172_470--Hb_000244_140 Hb_000577_070 Hb_000577_070 Hb_000172_470--Hb_000577_070 Hb_000092_050 Hb_000092_050 Hb_000172_470--Hb_000092_050 Hb_074836_020 Hb_074836_020 Hb_000172_470--Hb_074836_020 Hb_006816_110 Hb_006816_110 Hb_000172_470--Hb_006816_110 Hb_000500_070--Hb_006816_110 Hb_005357_170 Hb_005357_170 Hb_000500_070--Hb_005357_170 Hb_001741_110 Hb_001741_110 Hb_000500_070--Hb_001741_110 Hb_000139_110 Hb_000139_110 Hb_000500_070--Hb_000139_110 Hb_001486_050 Hb_001486_050 Hb_000500_070--Hb_001486_050 Hb_000244_140--Hb_000092_050 Hb_080081_010 Hb_080081_010 Hb_000244_140--Hb_080081_010 Hb_000244_140--Hb_000577_070 Hb_000244_140--Hb_074836_020 Hb_005479_050 Hb_005479_050 Hb_000244_140--Hb_005479_050 Hb_000577_070--Hb_000092_050 Hb_000577_070--Hb_074836_020 Hb_000140_300 Hb_000140_300 Hb_000577_070--Hb_000140_300 Hb_000577_070--Hb_000500_070 Hb_000092_050--Hb_080081_010 Hb_000010_040 Hb_000010_040 Hb_000092_050--Hb_000010_040 Hb_000025_220 Hb_000025_220 Hb_000092_050--Hb_000025_220 Hb_000635_020 Hb_000635_020 Hb_074836_020--Hb_000635_020 Hb_007575_090 Hb_007575_090 Hb_074836_020--Hb_007575_090 Hb_000236_210 Hb_000236_210 Hb_074836_020--Hb_000236_210 Hb_009486_030 Hb_009486_030 Hb_006816_110--Hb_009486_030 Hb_006816_110--Hb_080081_010 Hb_000521_070 Hb_000521_070 Hb_006816_110--Hb_000521_070 Hb_006816_110--Hb_001486_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.06317 3.45192 8.6093 174.941 1.85303 26.7432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.05956 1.09136 0 0 13.0721

CAGE analysis