Hb_001486_050

Information

Type -
Description -
Location Contig1486: 37114-37293
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_492181
description hypothetical protein
nr
ID XP_012070443.1
description PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
swissprot
ID Q9LVC0
description Arabinogalactan peptide 14 OS=Arabidopsis thaliana GN=AGP14 PE=1 SV=1
trembl
ID A0A067KU06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02716 PE=4 SV=1
Gene Ontology
ID GO:0005886
description arabinogalactan peptide 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12221: 36989-37590
cDNA
(Sanger)
(ID:Location)		 004_I13.ab1: 36989-37487 , 009_E10.ab1: 36989-37487 , 016_E17.ab1: 36989-37556 , 026_I04.ab1: 36986-37557 , 027_G04.ab1: 36989-37590 , 027_K07.ab1: 36986-37557

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_050 0.0 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
2 Hb_184541_010 0.1681600921 - - PREDICTED: selT-like protein [Jatropha curcas]
3 Hb_007741_090 0.1725049512 - - Autophagy-related 8f -like protein [Gossypium arboreum]
4 Hb_004525_080 0.1830406524 - - Sugar transporter ERD6-like 6 [Morus notabilis]
5 Hb_007575_090 0.1844730591 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
6 Hb_000139_110 0.1854529374 - - PREDICTED: mavicyanin [Jatropha curcas]
7 Hb_006816_110 0.1873448138 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
8 Hb_000521_070 0.1963202066 - - PREDICTED: uncharacterized protein LOC105650323 [Jatropha curcas]
9 Hb_000500_070 0.1989159906 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
10 Hb_099990_020 0.2045645628 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
11 Hb_054865_160 0.2079054864 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
12 Hb_005479_050 0.2080572422 - - -
13 Hb_034507_040 0.2106642878 - - peptide transporter, putative [Ricinus communis]
14 Hb_004925_030 0.2113818356 - - EXORDIUM like 1 [Theobroma cacao]
15 Hb_000302_110 0.2142641342 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_000172_470 0.2157355387 - - hypothetical protein POPTR_0005s08310g [Populus trichocarpa]
17 Hb_000244_140 0.2186564122 - - PREDICTED: cell wall / vacuolar inhibitor of fructosidase 2 [Jatropha curcas]
18 Hb_008185_020 0.2207189709 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
19 Hb_074836_020 0.2264614707 - - unnamed protein product [Vitis vinifera]
20 Hb_000236_210 0.2269538916 - - hypothetical protein JCGZ_01083 [Jatropha curcas]

Gene co-expression network

sample Hb_001486_050 Hb_001486_050 Hb_184541_010 Hb_184541_010 Hb_001486_050--Hb_184541_010 Hb_007741_090 Hb_007741_090 Hb_001486_050--Hb_007741_090 Hb_004525_080 Hb_004525_080 Hb_001486_050--Hb_004525_080 Hb_007575_090 Hb_007575_090 Hb_001486_050--Hb_007575_090 Hb_000139_110 Hb_000139_110 Hb_001486_050--Hb_000139_110 Hb_006816_110 Hb_006816_110 Hb_001486_050--Hb_006816_110 Hb_004125_070 Hb_004125_070 Hb_184541_010--Hb_004125_070 Hb_188313_010 Hb_188313_010 Hb_184541_010--Hb_188313_010 Hb_011918_010 Hb_011918_010 Hb_184541_010--Hb_011918_010 Hb_008185_020 Hb_008185_020 Hb_184541_010--Hb_008185_020 Hb_009083_030 Hb_009083_030 Hb_184541_010--Hb_009083_030 Hb_100137_010 Hb_100137_010 Hb_184541_010--Hb_100137_010 Hb_007741_090--Hb_007575_090 Hb_000521_070 Hb_000521_070 Hb_007741_090--Hb_000521_070 Hb_000302_110 Hb_000302_110 Hb_007741_090--Hb_000302_110 Hb_007741_090--Hb_184541_010 Hb_007741_090--Hb_011918_010 Hb_004925_030 Hb_004925_030 Hb_007741_090--Hb_004925_030 Hb_066514_010 Hb_066514_010 Hb_004525_080--Hb_066514_010 Hb_004525_080--Hb_007575_090 Hb_002900_100 Hb_002900_100 Hb_004525_080--Hb_002900_100 Hb_007441_090 Hb_007441_090 Hb_004525_080--Hb_007441_090 Hb_177152_010 Hb_177152_010 Hb_004525_080--Hb_177152_010 Hb_007575_090--Hb_011918_010 Hb_007575_090--Hb_066514_010 Hb_007575_090--Hb_002900_100 Hb_007575_090--Hb_000302_110 Hb_004117_330 Hb_004117_330 Hb_007575_090--Hb_004117_330 Hb_000500_070 Hb_000500_070 Hb_000139_110--Hb_000500_070 Hb_000139_110--Hb_006816_110 Hb_034507_040 Hb_034507_040 Hb_000139_110--Hb_034507_040 Hb_003713_010 Hb_003713_010 Hb_000139_110--Hb_003713_010 Hb_005293_020 Hb_005293_020 Hb_000139_110--Hb_005293_020 Hb_009486_030 Hb_009486_030 Hb_006816_110--Hb_009486_030 Hb_006816_110--Hb_000500_070 Hb_080081_010 Hb_080081_010 Hb_006816_110--Hb_080081_010 Hb_006816_110--Hb_000521_070 Hb_000172_470 Hb_000172_470 Hb_006816_110--Hb_000172_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
121.225 44.6782 169.391 1709.18 91.0545 233.217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0757 8.27204 51.7685 56.4655 83.826

CAGE analysis