Hb_000500_070

Information

Type -
Description -
Location Contig500: 60327-60800
Sequence    

Annotation

kegg
ID pop:POPTR_0015s12340g
description hypothetical protein
nr
ID XP_006374592.1
description hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FQA5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s12340g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45741: 60270-61436
cDNA
(Sanger)
(ID:Location)		 045_H21.ab1: 60272-60965

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_070 0.0 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
2 Hb_000172_470 0.1423160419 - - hypothetical protein POPTR_0005s08310g [Populus trichocarpa]
3 Hb_006816_110 0.1621616267 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
4 Hb_005357_170 0.1843817376 - - Pectinesterase precursor, putative [Ricinus communis]
5 Hb_001741_110 0.1895563978 rubber biosynthesis Gene Name: REF7 REF/SRPP-like protein [Glycine soja]
6 Hb_000139_110 0.1941346682 - - PREDICTED: mavicyanin [Jatropha curcas]
7 Hb_001486_050 0.1989159906 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
8 Hb_002681_150 0.1991506682 - - uridine cytidine kinase I, putative [Ricinus communis]
9 Hb_002374_540 0.1995728935 - - RecName: Full=Esterase; AltName: Full=Early nodule-specific protein homolog; AltName: Full=Latex allergen Hev b 13; AltName: Allergen=Hev b 13; Flags: Precursor [Hevea brasiliensis]
10 Hb_003765_010 0.201230168 - - berberine bridge enzyme [Hevea brasiliensis]
11 Hb_000313_080 0.2013430914 rubber biosynthesis Gene Name: CPT3 cis-prenyltransferase 3 [Hevea brasiliensis]
12 Hb_000140_300 0.2014152681 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000577_070 0.2045265301 - - -
14 Hb_000645_080 0.2046635709 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
15 Hb_000244_140 0.2069744078 - - PREDICTED: cell wall / vacuolar inhibitor of fructosidase 2 [Jatropha curcas]
16 Hb_001433_230 0.2091850745 - - PREDICTED: kinesin-4-like [Jatropha curcas]
17 Hb_003713_010 0.2096540343 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000362_030 0.2110149293 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
19 Hb_055276_010 0.2120859146 - - hypothetical protein POPTR_0003s02950g [Populus trichocarpa]
20 Hb_136944_010 0.2137480437 - - hypothetical protein JCGZ_02762 [Jatropha curcas]

Gene co-expression network

sample Hb_000500_070 Hb_000500_070 Hb_000172_470 Hb_000172_470 Hb_000500_070--Hb_000172_470 Hb_006816_110 Hb_006816_110 Hb_000500_070--Hb_006816_110 Hb_005357_170 Hb_005357_170 Hb_000500_070--Hb_005357_170 Hb_001741_110 Hb_001741_110 Hb_000500_070--Hb_001741_110 Hb_000139_110 Hb_000139_110 Hb_000500_070--Hb_000139_110 Hb_001486_050 Hb_001486_050 Hb_000500_070--Hb_001486_050 Hb_000244_140 Hb_000244_140 Hb_000172_470--Hb_000244_140 Hb_000577_070 Hb_000577_070 Hb_000172_470--Hb_000577_070 Hb_000092_050 Hb_000092_050 Hb_000172_470--Hb_000092_050 Hb_074836_020 Hb_074836_020 Hb_000172_470--Hb_074836_020 Hb_000172_470--Hb_006816_110 Hb_009486_030 Hb_009486_030 Hb_006816_110--Hb_009486_030 Hb_080081_010 Hb_080081_010 Hb_006816_110--Hb_080081_010 Hb_000521_070 Hb_000521_070 Hb_006816_110--Hb_000521_070 Hb_006816_110--Hb_001486_050 Hb_003685_070 Hb_003685_070 Hb_005357_170--Hb_003685_070 Hb_003765_010 Hb_003765_010 Hb_005357_170--Hb_003765_010 Hb_001887_010 Hb_001887_010 Hb_005357_170--Hb_001887_010 Hb_055276_010 Hb_055276_010 Hb_005357_170--Hb_055276_010 Hb_001433_230 Hb_001433_230 Hb_005357_170--Hb_001433_230 Hb_011224_030 Hb_011224_030 Hb_005357_170--Hb_011224_030 Hb_002374_540 Hb_002374_540 Hb_001741_110--Hb_002374_540 Hb_000087_010 Hb_000087_010 Hb_001741_110--Hb_000087_010 Hb_146255_010 Hb_146255_010 Hb_001741_110--Hb_146255_010 Hb_011169_010 Hb_011169_010 Hb_001741_110--Hb_011169_010 Hb_004884_050 Hb_004884_050 Hb_001741_110--Hb_004884_050 Hb_000313_080 Hb_000313_080 Hb_001741_110--Hb_000313_080 Hb_000139_110--Hb_001486_050 Hb_000139_110--Hb_006816_110 Hb_034507_040 Hb_034507_040 Hb_000139_110--Hb_034507_040 Hb_003713_010 Hb_003713_010 Hb_000139_110--Hb_003713_010 Hb_005293_020 Hb_005293_020 Hb_000139_110--Hb_005293_020 Hb_184541_010 Hb_184541_010 Hb_001486_050--Hb_184541_010 Hb_007741_090 Hb_007741_090 Hb_001486_050--Hb_007741_090 Hb_004525_080 Hb_004525_080 Hb_001486_050--Hb_004525_080 Hb_007575_090 Hb_007575_090 Hb_001486_050--Hb_007575_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0773 1.63415 19.02 276.855 6.31646 19.4532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17385 0.9221 0 0.289054 29.3665

CAGE analysis