Hb_000092_050

Information

Type -
Description -
Location Contig92: 61084-61287
Sequence    

Annotation

kegg
ID tcc:TCM_044182
description Uncharacterized protein isoform 1
nr
ID XP_012065757.1
description PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061FQ93
description Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_044182 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000092_050 0.0 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
2 Hb_000244_140 0.139607031 - - PREDICTED: cell wall / vacuolar inhibitor of fructosidase 2 [Jatropha curcas]
3 Hb_000172_470 0.1508856201 - - hypothetical protein POPTR_0005s08310g [Populus trichocarpa]
4 Hb_080081_010 0.1674520017 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Fragaria vesca subsp. vesca]
5 Hb_000577_070 0.1760693743 - - -
6 Hb_000010_040 0.19767284 - - PREDICTED: probable 1-aminocyclopropane-1-carboxylate deaminase-like isoform X2 [Citrus sinensis]
7 Hb_000025_220 0.2221778471 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
8 Hb_009803_010 0.2242539398 - - hypothetical protein JCGZ_08257 [Jatropha curcas]
9 Hb_005479_050 0.22839836 - - -
10 Hb_003641_010 0.2329280228 - - Pectinesterase-3 precursor, putative [Ricinus communis]
11 Hb_006816_110 0.2387063973 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
12 Hb_158296_010 0.2388596331 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
13 Hb_074836_020 0.2438562438 - - unnamed protein product [Vitis vinifera]
14 Hb_000140_300 0.2449265871 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000500_070 0.2458242439 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
16 Hb_000025_080 0.2465827823 - - -
17 Hb_000574_310 0.2498814954 - - hypothetical protein CISIN_1g027539mg [Citrus sinensis]
18 Hb_005263_010 0.2517452052 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Nicotiana sylvestris]
19 Hb_017014_020 0.2608566643 - - -
20 Hb_099990_020 0.2634568371 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]

Gene co-expression network

sample Hb_000092_050 Hb_000092_050 Hb_000244_140 Hb_000244_140 Hb_000092_050--Hb_000244_140 Hb_000172_470 Hb_000172_470 Hb_000092_050--Hb_000172_470 Hb_080081_010 Hb_080081_010 Hb_000092_050--Hb_080081_010 Hb_000577_070 Hb_000577_070 Hb_000092_050--Hb_000577_070 Hb_000010_040 Hb_000010_040 Hb_000092_050--Hb_000010_040 Hb_000025_220 Hb_000025_220 Hb_000092_050--Hb_000025_220 Hb_000244_140--Hb_080081_010 Hb_000244_140--Hb_000577_070 Hb_000244_140--Hb_000172_470 Hb_074836_020 Hb_074836_020 Hb_000244_140--Hb_074836_020 Hb_005479_050 Hb_005479_050 Hb_000244_140--Hb_005479_050 Hb_000500_070 Hb_000500_070 Hb_000172_470--Hb_000500_070 Hb_000172_470--Hb_000577_070 Hb_000172_470--Hb_074836_020 Hb_006816_110 Hb_006816_110 Hb_000172_470--Hb_006816_110 Hb_080081_010--Hb_006816_110 Hb_080081_010--Hb_005479_050 Hb_080081_010--Hb_000172_470 Hb_000220_020 Hb_000220_020 Hb_080081_010--Hb_000220_020 Hb_000577_070--Hb_074836_020 Hb_000140_300 Hb_000140_300 Hb_000577_070--Hb_000140_300 Hb_000577_070--Hb_000500_070 Hb_000270_540 Hb_000270_540 Hb_000010_040--Hb_000270_540 Hb_005368_030 Hb_005368_030 Hb_000010_040--Hb_005368_030 Hb_005263_010 Hb_005263_010 Hb_000010_040--Hb_005263_010 Hb_182507_010 Hb_182507_010 Hb_000010_040--Hb_182507_010 Hb_001660_140 Hb_001660_140 Hb_000010_040--Hb_001660_140 Hb_009803_010 Hb_009803_010 Hb_000025_220--Hb_009803_010 Hb_000025_220--Hb_005263_010 Hb_000733_260 Hb_000733_260 Hb_000025_220--Hb_000733_260 Hb_000025_220--Hb_005368_030 Hb_003641_010 Hb_003641_010 Hb_000025_220--Hb_003641_010 Hb_000574_310 Hb_000574_310 Hb_000025_220--Hb_000574_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.04924 10.0802 251.182 0.735194 64.1624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.51255 20.8228

CAGE analysis