Hb_074836_020

Information

Type -
Description -
Location Contig74836: 2726-2932
Sequence    

Annotation

kegg
ID vvi:100243613
description polynucleotide 3'-phosphatase ZDP
nr
ID CBI20188.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q84JE8
description Polynucleotide 3'-phosphatase ZDP OS=Arabidopsis thaliana GN=ZDP PE=1 SV=1
trembl
ID E0CS89
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g01290 PE=4 SV=1
Gene Ontology
ID GO:0005488
description polynucleotide 3 -phosphatase zdp

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56769: 2208-2308 , PASA_asmbl_56770: 1068-3247
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074836_020 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000244_140 0.1746521388 - - PREDICTED: cell wall / vacuolar inhibitor of fructosidase 2 [Jatropha curcas]
3 Hb_000577_070 0.1767849394 - - -
4 Hb_000172_470 0.1834170983 - - hypothetical protein POPTR_0005s08310g [Populus trichocarpa]
5 Hb_000635_020 0.1896606898 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007575_090 0.1941230981 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
7 Hb_000236_210 0.1944397076 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
8 Hb_080081_010 0.2089036141 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Fragaria vesca subsp. vesca]
9 Hb_000011_250 0.2102622474 - - PREDICTED: RING-H2 finger protein ATL3-like [Jatropha curcas]
10 Hb_000220_020 0.217347155 - - hypothetical protein CICLE_v10017575mg [Citrus clementina]
11 Hb_158296_010 0.2194294759 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
12 Hb_000500_070 0.2196372112 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
13 Hb_001216_060 0.2200144666 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006816_240 0.2206581181 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
15 Hb_004079_050 0.2219521582 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
16 Hb_002030_190 0.2228901731 - - conserved hypothetical protein [Ricinus communis]
17 Hb_184541_010 0.2236010043 - - PREDICTED: selT-like protein [Jatropha curcas]
18 Hb_017002_010 0.2242391138 - - PREDICTED: expansin-A15-like [Jatropha curcas]
19 Hb_001486_050 0.2264614707 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
20 Hb_007741_090 0.2272171786 - - Autophagy-related 8f -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_074836_020 Hb_074836_020 Hb_000244_140 Hb_000244_140 Hb_074836_020--Hb_000244_140 Hb_000577_070 Hb_000577_070 Hb_074836_020--Hb_000577_070 Hb_000172_470 Hb_000172_470 Hb_074836_020--Hb_000172_470 Hb_000635_020 Hb_000635_020 Hb_074836_020--Hb_000635_020 Hb_007575_090 Hb_007575_090 Hb_074836_020--Hb_007575_090 Hb_000236_210 Hb_000236_210 Hb_074836_020--Hb_000236_210 Hb_000092_050 Hb_000092_050 Hb_000244_140--Hb_000092_050 Hb_080081_010 Hb_080081_010 Hb_000244_140--Hb_080081_010 Hb_000244_140--Hb_000577_070 Hb_000244_140--Hb_000172_470 Hb_005479_050 Hb_005479_050 Hb_000244_140--Hb_005479_050 Hb_000577_070--Hb_000172_470 Hb_000577_070--Hb_000092_050 Hb_000140_300 Hb_000140_300 Hb_000577_070--Hb_000140_300 Hb_000500_070 Hb_000500_070 Hb_000577_070--Hb_000500_070 Hb_000172_470--Hb_000500_070 Hb_000172_470--Hb_000092_050 Hb_006816_110 Hb_006816_110 Hb_000172_470--Hb_006816_110 Hb_000635_020--Hb_000236_210 Hb_005116_090 Hb_005116_090 Hb_000635_020--Hb_005116_090 Hb_006816_240 Hb_006816_240 Hb_000635_020--Hb_006816_240 Hb_140627_040 Hb_140627_040 Hb_000635_020--Hb_140627_040 Hb_007100_010 Hb_007100_010 Hb_000635_020--Hb_007100_010 Hb_002228_120 Hb_002228_120 Hb_000635_020--Hb_002228_120 Hb_011918_010 Hb_011918_010 Hb_007575_090--Hb_011918_010 Hb_007741_090 Hb_007741_090 Hb_007575_090--Hb_007741_090 Hb_066514_010 Hb_066514_010 Hb_007575_090--Hb_066514_010 Hb_002900_100 Hb_002900_100 Hb_007575_090--Hb_002900_100 Hb_000302_110 Hb_000302_110 Hb_007575_090--Hb_000302_110 Hb_004117_330 Hb_004117_330 Hb_007575_090--Hb_004117_330 Hb_003464_100 Hb_003464_100 Hb_000236_210--Hb_003464_100 Hb_020831_060 Hb_020831_060 Hb_000236_210--Hb_020831_060 Hb_003893_060 Hb_003893_060 Hb_000236_210--Hb_003893_060 Hb_019299_020 Hb_019299_020 Hb_000236_210--Hb_019299_020 Hb_000220_020 Hb_000220_020 Hb_000236_210--Hb_000220_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.35283 4.11233 11.1297 85.6311 0 9.20673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.51209 3.0391 0 1.88846 5.81738

CAGE analysis