Hb_006816_110

Information

Type transcription factor
Description TF Family: HB
Location Contig6816: 86142-92583
Sequence    

Annotation

kegg
ID rcu:RCOM_1435170
description homeobox protein knotted-1, putative
nr
ID XP_012089429.1
description PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
swissprot
ID Q9FP29
description Homeobox protein knotted-1-like 1 OS=Oryza sativa subsp. japonica GN=OSH6 PE=2 SV=1
trembl
ID B9RFJ2
description Homeobox protein knotted-1, putative OS=Ricinus communis GN=RCOM_1435170 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox protein knotted-1-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53790: 85661-92598 , PASA_asmbl_53791: 91851-92287
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_110 0.0 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
2 Hb_009486_030 0.1589625842 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Jatropha curcas]
3 Hb_000500_070 0.1621616267 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
4 Hb_080081_010 0.1705769138 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Fragaria vesca subsp. vesca]
5 Hb_000521_070 0.1845221125 - - PREDICTED: uncharacterized protein LOC105650323 [Jatropha curcas]
6 Hb_001486_050 0.1873448138 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
7 Hb_000172_470 0.1919612759 - - hypothetical protein POPTR_0005s08310g [Populus trichocarpa]
8 Hb_000991_060 0.2053807327 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
9 Hb_000139_110 0.2077139569 - - PREDICTED: mavicyanin [Jatropha curcas]
10 Hb_000847_110 0.2078972602 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001296_010 0.2135704286 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002030_190 0.2152861431 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005479_050 0.2156321047 - - -
14 Hb_004925_030 0.218033883 - - EXORDIUM like 1 [Theobroma cacao]
15 Hb_000645_080 0.2186410285 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
16 Hb_000893_010 0.2216823466 - - PREDICTED: uncharacterized protein LOC105135422 [Populus euphratica]
17 Hb_017434_080 0.2218305522 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000206_270 0.2228257007 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
19 Hb_000244_140 0.2233117521 - - PREDICTED: cell wall / vacuolar inhibitor of fructosidase 2 [Jatropha curcas]
20 Hb_027411_030 0.2267208633 - - metal ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006816_110 Hb_006816_110 Hb_009486_030 Hb_009486_030 Hb_006816_110--Hb_009486_030 Hb_000500_070 Hb_000500_070 Hb_006816_110--Hb_000500_070 Hb_080081_010 Hb_080081_010 Hb_006816_110--Hb_080081_010 Hb_000521_070 Hb_000521_070 Hb_006816_110--Hb_000521_070 Hb_001486_050 Hb_001486_050 Hb_006816_110--Hb_001486_050 Hb_000172_470 Hb_000172_470 Hb_006816_110--Hb_000172_470 Hb_000991_060 Hb_000991_060 Hb_009486_030--Hb_000991_060 Hb_000291_240 Hb_000291_240 Hb_009486_030--Hb_000291_240 Hb_000244_290 Hb_000244_290 Hb_009486_030--Hb_000244_290 Hb_000243_240 Hb_000243_240 Hb_009486_030--Hb_000243_240 Hb_001296_010 Hb_001296_010 Hb_009486_030--Hb_001296_010 Hb_006252_070 Hb_006252_070 Hb_009486_030--Hb_006252_070 Hb_000500_070--Hb_000172_470 Hb_005357_170 Hb_005357_170 Hb_000500_070--Hb_005357_170 Hb_001741_110 Hb_001741_110 Hb_000500_070--Hb_001741_110 Hb_000139_110 Hb_000139_110 Hb_000500_070--Hb_000139_110 Hb_000500_070--Hb_001486_050 Hb_000244_140 Hb_000244_140 Hb_080081_010--Hb_000244_140 Hb_000092_050 Hb_000092_050 Hb_080081_010--Hb_000092_050 Hb_005479_050 Hb_005479_050 Hb_080081_010--Hb_005479_050 Hb_080081_010--Hb_000172_470 Hb_000220_020 Hb_000220_020 Hb_080081_010--Hb_000220_020 Hb_004925_030 Hb_004925_030 Hb_000521_070--Hb_004925_030 Hb_000302_110 Hb_000302_110 Hb_000521_070--Hb_000302_110 Hb_007741_090 Hb_007741_090 Hb_000521_070--Hb_007741_090 Hb_007575_090 Hb_007575_090 Hb_000521_070--Hb_007575_090 Hb_002030_190 Hb_002030_190 Hb_000521_070--Hb_002030_190 Hb_000206_270 Hb_000206_270 Hb_000521_070--Hb_000206_270 Hb_184541_010 Hb_184541_010 Hb_001486_050--Hb_184541_010 Hb_001486_050--Hb_007741_090 Hb_004525_080 Hb_004525_080 Hb_001486_050--Hb_004525_080 Hb_001486_050--Hb_007575_090 Hb_001486_050--Hb_000139_110 Hb_000172_470--Hb_000244_140 Hb_000577_070 Hb_000577_070 Hb_000172_470--Hb_000577_070 Hb_000172_470--Hb_000092_050 Hb_074836_020 Hb_074836_020 Hb_000172_470--Hb_074836_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.0282 3.3789 1.75859 67.0903 1.51712 5.19177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.140924 0.0831463 0 1.87249 6.23304

CAGE analysis