Hb_009486_030

Information

Type transcription factor
Description TF Family: WRKY
Location Contig9486: 15464-18473
Sequence    

Annotation

kegg
ID tcc:TCM_005744
description WRKY family transcription factor
nr
ID XP_012083720.1
description PREDICTED: probable WRKY transcription factor 12 [Jatropha curcas]
swissprot
ID Q93WY4
description Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1
trembl
ID K7LFU7
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63338: 15541-18416
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009486_030 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Jatropha curcas]
2 Hb_000991_060 0.1229665341 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
3 Hb_000291_240 0.1359292036 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
4 Hb_000244_290 0.1438714471 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
5 Hb_000243_240 0.1462080265 - - cytochrome P450 family protein [Populus trichocarpa]
6 Hb_001296_010 0.154525792 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006252_070 0.1557633988 - - hypothetical protein JCGZ_17254 [Jatropha curcas]
8 Hb_006816_110 0.1589625842 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
9 Hb_011344_110 0.1595913424 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
10 Hb_025557_080 0.1597003629 transcription factor TF Family: zf-HD -
11 Hb_057343_010 0.1616004864 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
12 Hb_001157_120 0.1628520252 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
13 Hb_027411_030 0.1669697368 - - metal ion binding protein, putative [Ricinus communis]
14 Hb_000193_130 0.1681725582 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_000638_230 0.1688234496 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_025557_070 0.1698151388 transcription factor TF Family: zf-HD hypothetical protein JCGZ_11626 [Jatropha curcas]
17 Hb_004449_100 0.1709593216 - - -
18 Hb_001141_260 0.1723903674 - - Uncharacterized protein TCM_020647 [Theobroma cacao]
19 Hb_000580_210 0.1729047571 - - PREDICTED: cysteine-rich repeat secretory protein 15 [Jatropha curcas]
20 Hb_145975_010 0.173503366 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_009486_030 Hb_009486_030 Hb_000991_060 Hb_000991_060 Hb_009486_030--Hb_000991_060 Hb_000291_240 Hb_000291_240 Hb_009486_030--Hb_000291_240 Hb_000244_290 Hb_000244_290 Hb_009486_030--Hb_000244_290 Hb_000243_240 Hb_000243_240 Hb_009486_030--Hb_000243_240 Hb_001296_010 Hb_001296_010 Hb_009486_030--Hb_001296_010 Hb_006252_070 Hb_006252_070 Hb_009486_030--Hb_006252_070 Hb_000991_060--Hb_006252_070 Hb_027411_030 Hb_027411_030 Hb_000991_060--Hb_027411_030 Hb_000991_060--Hb_000291_240 Hb_000991_060--Hb_001296_010 Hb_013399_060 Hb_013399_060 Hb_000991_060--Hb_013399_060 Hb_004757_010 Hb_004757_010 Hb_000991_060--Hb_004757_010 Hb_025557_080 Hb_025557_080 Hb_000291_240--Hb_025557_080 Hb_001454_350 Hb_001454_350 Hb_000291_240--Hb_001454_350 Hb_000291_240--Hb_000243_240 Hb_145975_010 Hb_145975_010 Hb_000291_240--Hb_145975_010 Hb_001141_430 Hb_001141_430 Hb_000291_240--Hb_001141_430 Hb_011344_110 Hb_011344_110 Hb_000244_290--Hb_011344_110 Hb_000628_070 Hb_000628_070 Hb_000244_290--Hb_000628_070 Hb_000244_290--Hb_000243_240 Hb_000327_350 Hb_000327_350 Hb_000244_290--Hb_000327_350 Hb_000816_090 Hb_000816_090 Hb_000244_290--Hb_000816_090 Hb_001157_120 Hb_001157_120 Hb_000244_290--Hb_001157_120 Hb_000243_240--Hb_001157_120 Hb_000816_170 Hb_000816_170 Hb_000243_240--Hb_000816_170 Hb_000243_240--Hb_001141_430 Hb_001343_060 Hb_001343_060 Hb_000243_240--Hb_001343_060 Hb_000243_240--Hb_011344_110 Hb_010863_020 Hb_010863_020 Hb_001296_010--Hb_010863_020 Hb_001296_010--Hb_013399_060 Hb_011344_050 Hb_011344_050 Hb_001296_010--Hb_011344_050 Hb_002030_190 Hb_002030_190 Hb_001296_010--Hb_002030_190 Hb_001296_010--Hb_027411_030 Hb_000188_040 Hb_000188_040 Hb_006252_070--Hb_000188_040 Hb_000020_140 Hb_000020_140 Hb_006252_070--Hb_000020_140 Hb_006252_070--Hb_001454_350 Hb_002014_130 Hb_002014_130 Hb_006252_070--Hb_002014_130 Hb_006252_070--Hb_000291_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.218927 0.411354 0.090374 11.726 0.113195 0.180362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0670416 0 0 0.469333 1.37633

CAGE analysis