Hb_000206_270

Information

Type transcription factor
Description TF Family: G2-like
Location Contig206: 335083-337704
Sequence    

Annotation

kegg
ID rcu:RCOM_0277900
description transcription factor, putative
nr
ID XP_002530352.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q8GUN5
description Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1
trembl
ID B9SWI3
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0277900 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000206_270 0.0 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
2 Hb_002030_190 0.1019525629 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012217_010 0.1130178553 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
4 Hb_013399_060 0.1149695257 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
5 Hb_001418_050 0.1161721283 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
6 Hb_011344_050 0.1163717732 - - PREDICTED: 21 kDa protein [Jatropha curcas]
7 Hb_000098_230 0.1169481382 - - Potassium channel AKT2/3, putative [Ricinus communis]
8 Hb_007441_100 0.1193115643 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
9 Hb_000188_140 0.1204407762 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
10 Hb_010863_020 0.1221539777 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X1 [Jatropha curcas]
11 Hb_004617_010 0.1239504761 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X3 [Citrus sinensis]
12 Hb_000847_110 0.1239658189 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000152_630 0.1242870544 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
14 Hb_001300_030 0.1268720184 - - hypothetical protein JCGZ_13871 [Jatropha curcas]
15 Hb_004757_010 0.1277826669 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
16 Hb_001296_010 0.1285103345 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000920_120 0.1319895833 - - -
18 Hb_000378_030 0.1322746597 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000349_280 0.133450378 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011930_090 0.13413488 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]

Gene co-expression network

sample Hb_000206_270 Hb_000206_270 Hb_002030_190 Hb_002030_190 Hb_000206_270--Hb_002030_190 Hb_012217_010 Hb_012217_010 Hb_000206_270--Hb_012217_010 Hb_013399_060 Hb_013399_060 Hb_000206_270--Hb_013399_060 Hb_001418_050 Hb_001418_050 Hb_000206_270--Hb_001418_050 Hb_011344_050 Hb_011344_050 Hb_000206_270--Hb_011344_050 Hb_000098_230 Hb_000098_230 Hb_000206_270--Hb_000098_230 Hb_002030_190--Hb_011344_050 Hb_001296_010 Hb_001296_010 Hb_002030_190--Hb_001296_010 Hb_000152_630 Hb_000152_630 Hb_002030_190--Hb_000152_630 Hb_000920_120 Hb_000920_120 Hb_002030_190--Hb_000920_120 Hb_002030_190--Hb_013399_060 Hb_011930_090 Hb_011930_090 Hb_012217_010--Hb_011930_090 Hb_007441_100 Hb_007441_100 Hb_012217_010--Hb_007441_100 Hb_032260_040 Hb_032260_040 Hb_012217_010--Hb_032260_040 Hb_000847_110 Hb_000847_110 Hb_012217_010--Hb_000847_110 Hb_001541_170 Hb_001541_170 Hb_012217_010--Hb_001541_170 Hb_019299_010 Hb_019299_010 Hb_012217_010--Hb_019299_010 Hb_010863_020 Hb_010863_020 Hb_013399_060--Hb_010863_020 Hb_003858_070 Hb_003858_070 Hb_013399_060--Hb_003858_070 Hb_001006_300 Hb_001006_300 Hb_013399_060--Hb_001006_300 Hb_003598_050 Hb_003598_050 Hb_013399_060--Hb_003598_050 Hb_180088_010 Hb_180088_010 Hb_013399_060--Hb_180088_010 Hb_013399_060--Hb_001296_010 Hb_001418_050--Hb_000098_230 Hb_001418_050--Hb_007441_100 Hb_001418_050--Hb_000847_110 Hb_000378_030 Hb_000378_030 Hb_001418_050--Hb_000378_030 Hb_001418_050--Hb_001541_170 Hb_001500_020 Hb_001500_020 Hb_001418_050--Hb_001500_020 Hb_004757_010 Hb_004757_010 Hb_011344_050--Hb_004757_010 Hb_027411_030 Hb_027411_030 Hb_011344_050--Hb_027411_030 Hb_011344_050--Hb_010863_020 Hb_006618_100 Hb_006618_100 Hb_011344_050--Hb_006618_100 Hb_011344_050--Hb_013399_060 Hb_011344_050--Hb_001296_010 Hb_000098_230--Hb_001541_170 Hb_003582_030 Hb_003582_030 Hb_000098_230--Hb_003582_030 Hb_007919_010 Hb_007919_010 Hb_000098_230--Hb_007919_010 Hb_000422_060 Hb_000422_060 Hb_000098_230--Hb_000422_060 Hb_000098_230--Hb_007441_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0380931 0.411886 0.272779 3.34222 0.0476665 0.0176277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0304566 0 0.0975354 0.252665

CAGE analysis