Hb_000010_040

Information

Type -
Description -
Location Contig10: 29567-49384
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa017238mg
description hypothetical protein
nr
ID XP_006478105.1
description PREDICTED: probable 1-aminocyclopropane-1-carboxylate deaminase-like isoform X2 [Citrus sinensis]
swissprot
ID Q6ZHE5
description Putative D-cysteine desulfhydrase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0773300 PE=2 SV=2
trembl
ID A0A0A0LVC4
description Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031770 PE=4 SV=1
Gene Ontology
ID GO:0008660
description 1-aminocyclopropane-1-carboxylate deaminase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_040 0.0 - - PREDICTED: probable 1-aminocyclopropane-1-carboxylate deaminase-like isoform X2 [Citrus sinensis]
2 Hb_000092_050 0.19767284 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
3 Hb_000270_540 0.2259517478 - - hypothetical protein JCGZ_11527 [Jatropha curcas]
4 Hb_005368_030 0.2382840034 - - -
5 Hb_005263_010 0.2432623077 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Nicotiana sylvestris]
6 Hb_182507_010 0.2484403741 - - -
7 Hb_001660_140 0.2494010088 - - -
8 Hb_000025_080 0.2495304497 - - -
9 Hb_013040_010 0.2565827671 - - hypothetical protein POPTR_0009s09690g [Populus trichocarpa]
10 Hb_024479_010 0.2576108338 - - beta-amyrin synthase [Euphorbia tirucalli]
11 Hb_041601_010 0.2600447132 - - -
12 Hb_000953_120 0.2734467614 - - -
13 Hb_000244_140 0.2748425431 - - PREDICTED: cell wall / vacuolar inhibitor of fructosidase 2 [Jatropha curcas]
14 Hb_080081_010 0.2783730125 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Fragaria vesca subsp. vesca]
15 Hb_009803_010 0.2803578874 - - hypothetical protein JCGZ_08257 [Jatropha curcas]
16 Hb_000025_220 0.2831836519 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
17 Hb_004907_030 0.2832033265 - - hypothetical protein POPTR_0012s032802g, partial [Populus trichocarpa]
18 Hb_009119_010 0.2837170527 - - -
19 Hb_000172_470 0.2839458829 - - hypothetical protein POPTR_0005s08310g [Populus trichocarpa]
20 Hb_047691_010 0.2890148147 - - Uncharacterized protein F383_01974 [Gossypium arboreum]

Gene co-expression network

sample Hb_000010_040 Hb_000010_040 Hb_000092_050 Hb_000092_050 Hb_000010_040--Hb_000092_050 Hb_000270_540 Hb_000270_540 Hb_000010_040--Hb_000270_540 Hb_005368_030 Hb_005368_030 Hb_000010_040--Hb_005368_030 Hb_005263_010 Hb_005263_010 Hb_000010_040--Hb_005263_010 Hb_182507_010 Hb_182507_010 Hb_000010_040--Hb_182507_010 Hb_001660_140 Hb_001660_140 Hb_000010_040--Hb_001660_140 Hb_000244_140 Hb_000244_140 Hb_000092_050--Hb_000244_140 Hb_000172_470 Hb_000172_470 Hb_000092_050--Hb_000172_470 Hb_080081_010 Hb_080081_010 Hb_000092_050--Hb_080081_010 Hb_000577_070 Hb_000577_070 Hb_000092_050--Hb_000577_070 Hb_000025_220 Hb_000025_220 Hb_000092_050--Hb_000025_220 Hb_000270_540--Hb_001660_140 Hb_000270_540--Hb_182507_010 Hb_013040_010 Hb_013040_010 Hb_000270_540--Hb_013040_010 Hb_000270_540--Hb_005368_030 Hb_004907_030 Hb_004907_030 Hb_000270_540--Hb_004907_030 Hb_033312_110 Hb_033312_110 Hb_000270_540--Hb_033312_110 Hb_005368_030--Hb_182507_010 Hb_005368_030--Hb_001660_140 Hb_005368_030--Hb_005263_010 Hb_005368_030--Hb_013040_010 Hb_005368_030--Hb_004907_030 Hb_005263_010--Hb_000025_220 Hb_005263_010--Hb_182507_010 Hb_005263_010--Hb_001660_140 Hb_009803_010 Hb_009803_010 Hb_005263_010--Hb_009803_010 Hb_005263_010--Hb_013040_010 Hb_182507_010--Hb_001660_140 Hb_182507_010--Hb_013040_010 Hb_182507_010--Hb_004907_030 Hb_182507_010--Hb_033312_110 Hb_001660_140--Hb_013040_010 Hb_001660_140--Hb_004907_030 Hb_001660_140--Hb_033312_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 1.60636 0 0.689606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0523652 0.227418

CAGE analysis