Hb_034507_040

Information

Type -
Description -
Location Contig34507: 81891-94362
Sequence    

Annotation

kegg
ID rcu:RCOM_0098850
description peptide transporter, putative
nr
ID XP_002533893.1
description peptide transporter, putative [Ricinus communis]
swissprot
ID Q9M390
description Protein NRT1/ PTR FAMILY 8.1 OS=Arabidopsis thaliana GN=NPF8.1 PE=1 SV=1
trembl
ID B9T6M4
description Peptide transporter, putative OS=Ricinus communis GN=RCOM_0098850 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36055: 92649-93761 , PASA_asmbl_36056: 93796-94287
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034507_040 0.0 - - peptide transporter, putative [Ricinus communis]
2 Hb_188313_010 0.1725907774 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
3 Hb_000311_040 0.1744076606 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
4 Hb_054865_160 0.185872492 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
5 Hb_001217_010 0.1920200478 - - hypothetical protein JCGZ_04022 [Jatropha curcas]
6 Hb_011287_040 0.1931017709 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
7 Hb_001247_030 0.1989387953 - - -
8 Hb_000281_060 0.200002479 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
9 Hb_008185_020 0.2034514865 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
10 Hb_002760_050 0.2049972509 - - conserved hypothetical protein [Ricinus communis]
11 Hb_184541_010 0.205418276 - - PREDICTED: selT-like protein [Jatropha curcas]
12 Hb_001486_050 0.2106642878 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
13 Hb_003058_230 0.2163952027 - - copper ion binding protein, putative [Ricinus communis]
14 Hb_100137_010 0.2173138265 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
15 Hb_122636_010 0.2210810131 - - dienelactone hydrolase family protein [Populus trichocarpa]
16 Hb_000139_110 0.2218659733 - - PREDICTED: mavicyanin [Jatropha curcas]
17 Hb_006634_110 0.2223086158 - - BnaC04g40780D [Brassica napus]
18 Hb_182713_020 0.2257474559 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
19 Hb_000291_160 0.226746702 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
20 Hb_006642_030 0.2290196434 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]

Gene co-expression network

sample Hb_034507_040 Hb_034507_040 Hb_188313_010 Hb_188313_010 Hb_034507_040--Hb_188313_010 Hb_000311_040 Hb_000311_040 Hb_034507_040--Hb_000311_040 Hb_054865_160 Hb_054865_160 Hb_034507_040--Hb_054865_160 Hb_001217_010 Hb_001217_010 Hb_034507_040--Hb_001217_010 Hb_011287_040 Hb_011287_040 Hb_034507_040--Hb_011287_040 Hb_001247_030 Hb_001247_030 Hb_034507_040--Hb_001247_030 Hb_182713_020 Hb_182713_020 Hb_188313_010--Hb_182713_020 Hb_009083_030 Hb_009083_030 Hb_188313_010--Hb_009083_030 Hb_188313_010--Hb_001247_030 Hb_184541_010 Hb_184541_010 Hb_188313_010--Hb_184541_010 Hb_188313_010--Hb_001217_010 Hb_100137_010 Hb_100137_010 Hb_188313_010--Hb_100137_010 Hb_001195_410 Hb_001195_410 Hb_000311_040--Hb_001195_410 Hb_000816_190 Hb_000816_190 Hb_000311_040--Hb_000816_190 Hb_000291_160 Hb_000291_160 Hb_000311_040--Hb_000291_160 Hb_011918_010 Hb_011918_010 Hb_000311_040--Hb_011918_010 Hb_008185_020 Hb_008185_020 Hb_000311_040--Hb_008185_020 Hb_003058_230 Hb_003058_230 Hb_054865_160--Hb_003058_230 Hb_053709_040 Hb_053709_040 Hb_054865_160--Hb_053709_040 Hb_054865_160--Hb_008185_020 Hb_054865_160--Hb_000816_190 Hb_007575_090 Hb_007575_090 Hb_054865_160--Hb_007575_090 Hb_054865_160--Hb_011918_010 Hb_122636_010 Hb_122636_010 Hb_001217_010--Hb_122636_010 Hb_001217_010--Hb_100137_010 Hb_002760_050 Hb_002760_050 Hb_001217_010--Hb_002760_050 Hb_000125_020 Hb_000125_020 Hb_001217_010--Hb_000125_020 Hb_001217_010--Hb_000291_160 Hb_011287_040--Hb_182713_020 Hb_001518_070 Hb_001518_070 Hb_011287_040--Hb_001518_070 Hb_011287_040--Hb_008185_020 Hb_000053_030 Hb_000053_030 Hb_011287_040--Hb_000053_030 Hb_073799_010 Hb_073799_010 Hb_011287_040--Hb_073799_010 Hb_013394_100 Hb_013394_100 Hb_011287_040--Hb_013394_100 Hb_004125_070 Hb_004125_070 Hb_001247_030--Hb_004125_070 Hb_000028_260 Hb_000028_260 Hb_001247_030--Hb_000028_260 Hb_001247_030--Hb_008185_020 Hb_001247_030--Hb_184541_010 Hb_004079_050 Hb_004079_050 Hb_001247_030--Hb_004079_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.57382 0.303571 0.231605 5.76944 0.611316 0.795931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.451971 0.395197 0.321975 0.0704834 0.443705

CAGE analysis