Hb_182713_020

Information

Type -
Description -
Location Contig182713: 14019-14354
Sequence    

Annotation

kegg
ID sita:101778579
description vesicle-associated membrane protein 727-like
nr
ID XP_004974204.1
description PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
swissprot
ID Q9M376
description Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1
trembl
ID K3YJF1
description Uncharacterized protein OS=Setaria italica GN=Si014368m.g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_182713_020 0.0 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
2 Hb_188313_010 0.1105390546 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
3 Hb_013394_100 0.1303873213 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
4 Hb_000111_030 0.1333469108 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
5 Hb_009083_030 0.1382176466 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
6 Hb_073799_010 0.1507663959 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011287_040 0.1518748654 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
8 Hb_004669_030 0.1557526855 - - -
9 Hb_002388_010 0.1562869261 - - -
10 Hb_001518_070 0.1666609416 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002192_090 0.166763821 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
12 Hb_001217_010 0.1673165716 - - hypothetical protein JCGZ_04022 [Jatropha curcas]
13 Hb_089202_010 0.168494903 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
14 Hb_000125_020 0.1692278071 transcription factor TF Family: mTERF -
15 Hb_000671_120 0.1697754662 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
16 Hb_000053_030 0.1712619302 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
17 Hb_001247_030 0.171806688 - - -
18 Hb_008185_020 0.1766560868 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
19 Hb_001747_030 0.1768576813 - - hypothetical protein F383_08210 [Gossypium arboreum]
20 Hb_000789_150 0.1779066828 - - Acid phosphatase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_182713_020 Hb_182713_020 Hb_188313_010 Hb_188313_010 Hb_182713_020--Hb_188313_010 Hb_013394_100 Hb_013394_100 Hb_182713_020--Hb_013394_100 Hb_000111_030 Hb_000111_030 Hb_182713_020--Hb_000111_030 Hb_009083_030 Hb_009083_030 Hb_182713_020--Hb_009083_030 Hb_073799_010 Hb_073799_010 Hb_182713_020--Hb_073799_010 Hb_011287_040 Hb_011287_040 Hb_182713_020--Hb_011287_040 Hb_188313_010--Hb_009083_030 Hb_001247_030 Hb_001247_030 Hb_188313_010--Hb_001247_030 Hb_184541_010 Hb_184541_010 Hb_188313_010--Hb_184541_010 Hb_001217_010 Hb_001217_010 Hb_188313_010--Hb_001217_010 Hb_100137_010 Hb_100137_010 Hb_188313_010--Hb_100137_010 Hb_000789_150 Hb_000789_150 Hb_013394_100--Hb_000789_150 Hb_099298_010 Hb_099298_010 Hb_013394_100--Hb_099298_010 Hb_002079_040 Hb_002079_040 Hb_013394_100--Hb_002079_040 Hb_011200_010 Hb_011200_010 Hb_013394_100--Hb_011200_010 Hb_108227_010 Hb_108227_010 Hb_013394_100--Hb_108227_010 Hb_002388_010 Hb_002388_010 Hb_000111_030--Hb_002388_010 Hb_130613_010 Hb_130613_010 Hb_000111_030--Hb_130613_010 Hb_001747_030 Hb_001747_030 Hb_000111_030--Hb_001747_030 Hb_002344_130 Hb_002344_130 Hb_000111_030--Hb_002344_130 Hb_002192_090 Hb_002192_090 Hb_000111_030--Hb_002192_090 Hb_009083_030--Hb_100137_010 Hb_009083_030--Hb_184541_010 Hb_017014_020 Hb_017014_020 Hb_009083_030--Hb_017014_020 Hb_002611_030 Hb_002611_030 Hb_009083_030--Hb_002611_030 Hb_073799_010--Hb_002388_010 Hb_011942_010 Hb_011942_010 Hb_073799_010--Hb_011942_010 Hb_128473_010 Hb_128473_010 Hb_073799_010--Hb_128473_010 Hb_073799_010--Hb_013394_100 Hb_073799_010--Hb_011287_040 Hb_001518_070 Hb_001518_070 Hb_011287_040--Hb_001518_070 Hb_008185_020 Hb_008185_020 Hb_011287_040--Hb_008185_020 Hb_000053_030 Hb_000053_030 Hb_011287_040--Hb_000053_030 Hb_011287_040--Hb_013394_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.8866 19.2601 34.392 321.02 28.9534 116.778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.5833 70.1721 25.4878 31.0494 9.29716

CAGE analysis