Hb_108227_010

Information

Type -
Description -
Location Contig108227: 201-753
Sequence    

Annotation

kegg
ID cam:101488330
description profilin-1-like
nr
ID Q9STB6.1
description RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
swissprot
ID Q9STB6
description Profilin-2 OS=Hevea brasiliensis GN=PRO2 PE=1 SV=1
trembl
ID I3SDB5
description Profilin OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID GO:0005737
description profilin 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_108227_010 0.0 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
2 Hb_000015_070 0.1207890788 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
3 Hb_003371_170 0.1409836252 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001396_250 0.1477460147 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
5 Hb_012675_080 0.1490546552 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
6 Hb_000789_150 0.1620860647 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
7 Hb_013394_100 0.1683931188 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
8 Hb_002192_090 0.1701531909 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
9 Hb_001623_290 0.1744750037 - - unknown [Populus trichocarpa]
10 Hb_183522_010 0.1759624049 - - Far upstream element-binding protein, putative [Ricinus communis]
11 Hb_166480_010 0.1773754336 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
12 Hb_005107_020 0.1791782344 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
13 Hb_011037_020 0.1801566053 - - unknown [Picea sitchensis]
14 Hb_001623_300 0.1806481715 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
15 Hb_000671_120 0.1809421324 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
16 Hb_006663_090 0.1834552745 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
17 Hb_003656_150 0.1846145709 - - -
18 Hb_006487_060 0.1863206199 - - Defective in cullin neddylation protein, putative [Ricinus communis]
19 Hb_000053_030 0.1864417583 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
20 Hb_002078_500 0.1865898676 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_108227_010 Hb_108227_010 Hb_000015_070 Hb_000015_070 Hb_108227_010--Hb_000015_070 Hb_003371_170 Hb_003371_170 Hb_108227_010--Hb_003371_170 Hb_001396_250 Hb_001396_250 Hb_108227_010--Hb_001396_250 Hb_012675_080 Hb_012675_080 Hb_108227_010--Hb_012675_080 Hb_000789_150 Hb_000789_150 Hb_108227_010--Hb_000789_150 Hb_013394_100 Hb_013394_100 Hb_108227_010--Hb_013394_100 Hb_000015_070--Hb_001396_250 Hb_000015_070--Hb_003371_170 Hb_166480_010 Hb_166480_010 Hb_000015_070--Hb_166480_010 Hb_011214_100 Hb_011214_100 Hb_000015_070--Hb_011214_100 Hb_000015_070--Hb_012675_080 Hb_006663_090 Hb_006663_090 Hb_003371_170--Hb_006663_090 Hb_106415_010 Hb_106415_010 Hb_003371_170--Hb_106415_010 Hb_076875_020 Hb_076875_020 Hb_003371_170--Hb_076875_020 Hb_068014_010 Hb_068014_010 Hb_003371_170--Hb_068014_010 Hb_001396_250--Hb_011214_100 Hb_001396_250--Hb_166480_010 Hb_001396_250--Hb_012675_080 Hb_014050_010 Hb_014050_010 Hb_001396_250--Hb_014050_010 Hb_002784_070 Hb_002784_070 Hb_001396_250--Hb_002784_070 Hb_003656_150 Hb_003656_150 Hb_012675_080--Hb_003656_150 Hb_000086_190 Hb_000086_190 Hb_012675_080--Hb_000086_190 Hb_006995_010 Hb_006995_010 Hb_012675_080--Hb_006995_010 Hb_011037_020 Hb_011037_020 Hb_012675_080--Hb_011037_020 Hb_000789_150--Hb_012675_080 Hb_000789_150--Hb_013394_100 Hb_000789_150--Hb_000015_070 Hb_000789_150--Hb_001396_250 Hb_000671_120 Hb_000671_120 Hb_000789_150--Hb_000671_120 Hb_182713_020 Hb_182713_020 Hb_013394_100--Hb_182713_020 Hb_099298_010 Hb_099298_010 Hb_013394_100--Hb_099298_010 Hb_002079_040 Hb_002079_040 Hb_013394_100--Hb_002079_040 Hb_011200_010 Hb_011200_010 Hb_013394_100--Hb_011200_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
123.551 63.4002 63.5339 725.763 39.9555 752.815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
212.93 151.273 124.523 35.5286 32.7236

CAGE analysis