Hb_002784_070

Information

Type -
Description -
Location Contig2784: 76905-78278
Sequence    

Annotation

kegg
ID -
description -
nr
ID CDY66371.1
description BnaUnng01470D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A0D3BQD3
description Uncharacterized protein (Fragment) OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna replication complex gins protein psf3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29090: 76917-77331 , PASA_asmbl_29091: 77375-87212
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002784_070 0.0 - - BnaUnng01470D [Brassica napus]
2 Hb_011214_100 0.132900929 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
3 Hb_005085_030 0.1366183712 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
4 Hb_001396_250 0.1371619504 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
5 Hb_000015_070 0.1381449893 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
6 Hb_166480_010 0.1389084091 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
7 Hb_007188_020 0.1520881111 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
8 Hb_152554_010 0.1556178655 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
9 Hb_025288_010 0.1626910783 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
10 Hb_116632_010 0.1639476856 - - unnamed protein product [Vitis vinifera]
11 Hb_000120_190 0.1641641784 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
12 Hb_132180_010 0.1643349212 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
13 Hb_175976_010 0.1671010207 - - -
14 Hb_029142_070 0.1688363315 - - -
15 Hb_002078_260 0.1691083248 - - unknown [Populus trichocarpa]
16 Hb_098852_010 0.1716142511 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
17 Hb_041205_010 0.1728090632 - - conserved hypothetical protein [Ricinus communis]
18 Hb_082006_010 0.1739503177 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000635_070 0.1761033175 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
20 Hb_030982_020 0.1762071379 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002784_070 Hb_002784_070 Hb_011214_100 Hb_011214_100 Hb_002784_070--Hb_011214_100 Hb_005085_030 Hb_005085_030 Hb_002784_070--Hb_005085_030 Hb_001396_250 Hb_001396_250 Hb_002784_070--Hb_001396_250 Hb_000015_070 Hb_000015_070 Hb_002784_070--Hb_000015_070 Hb_166480_010 Hb_166480_010 Hb_002784_070--Hb_166480_010 Hb_007188_020 Hb_007188_020 Hb_002784_070--Hb_007188_020 Hb_011214_100--Hb_001396_250 Hb_030982_020 Hb_030982_020 Hb_011214_100--Hb_030982_020 Hb_132180_010 Hb_132180_010 Hb_011214_100--Hb_132180_010 Hb_002078_260 Hb_002078_260 Hb_011214_100--Hb_002078_260 Hb_011214_100--Hb_000015_070 Hb_000342_160 Hb_000342_160 Hb_011214_100--Hb_000342_160 Hb_005679_070 Hb_005679_070 Hb_005085_030--Hb_005679_070 Hb_004060_030 Hb_004060_030 Hb_005085_030--Hb_004060_030 Hb_152554_010 Hb_152554_010 Hb_005085_030--Hb_152554_010 Hb_006663_090 Hb_006663_090 Hb_005085_030--Hb_006663_090 Hb_005085_030--Hb_007188_020 Hb_005085_030--Hb_166480_010 Hb_001396_250--Hb_000015_070 Hb_001396_250--Hb_166480_010 Hb_012675_080 Hb_012675_080 Hb_001396_250--Hb_012675_080 Hb_014050_010 Hb_014050_010 Hb_001396_250--Hb_014050_010 Hb_003371_170 Hb_003371_170 Hb_000015_070--Hb_003371_170 Hb_108227_010 Hb_108227_010 Hb_000015_070--Hb_108227_010 Hb_000015_070--Hb_166480_010 Hb_000015_070--Hb_012675_080 Hb_002482_060 Hb_002482_060 Hb_166480_010--Hb_002482_060 Hb_000120_190 Hb_000120_190 Hb_166480_010--Hb_000120_190 Hb_007763_050 Hb_007763_050 Hb_166480_010--Hb_007763_050 Hb_007188_020--Hb_152554_010 Hb_116632_010 Hb_116632_010 Hb_007188_020--Hb_116632_010 Hb_032927_010 Hb_032927_010 Hb_007188_020--Hb_032927_010 Hb_000001_040 Hb_000001_040 Hb_007188_020--Hb_000001_040 Hb_000812_040 Hb_000812_040 Hb_007188_020--Hb_000812_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.918371 0.131632 0.128999 3.69674 0.291274 5.23282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.69876 2.674 0.775808 1.35527 0.422071

CAGE analysis