Hb_000120_190

Information

Type -
Description -
Location Contig120: 121231-121536
Sequence    

Annotation

kegg
ID mus:103996651
description PHD finger-like domain-containing protein 5B
nr
ID XP_002525660.1
description Pre-mRNA-splicing factor ini1 [Ricinus communis]
swissprot
ID Q0WMV8
description PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana GN=At1g07170 PE=2 SV=1
trembl
ID A0A067LGJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08450 PE=4 SV=1
Gene Ontology
ID GO:0005689
description phd finger-like domain-containing protein 5b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06072: 121071-123634
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_190 0.0 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
2 Hb_002482_060 0.0832426632 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
3 Hb_010368_030 0.1225393884 - - BnaA07g35570D [Brassica napus]
4 Hb_175976_010 0.1239508015 - - -
5 Hb_166480_010 0.1259080935 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
6 Hb_029142_020 0.1442353212 - - hypothetical protein POPTR_0004s23900g [Populus trichocarpa]
7 Hb_006198_090 0.1474352331 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
8 Hb_001260_030 0.1481371791 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001396_250 0.1498839118 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
10 Hb_000127_090 0.1503137892 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011214_100 0.1538126959 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
12 Hb_005731_140 0.1580006456 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
13 Hb_007763_050 0.160669628 - - hypothetical protein L484_012752 [Morus notabilis]
14 Hb_000086_190 0.1620637345 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
15 Hb_007188_020 0.1621207027 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
16 Hb_008221_110 0.1624109317 - - PREDICTED: diphthamide biosynthesis protein 4 [Jatropha curcas]
17 Hb_002784_070 0.1641641784 - - BnaUnng01470D [Brassica napus]
18 Hb_000810_020 0.1655589914 - - -
19 Hb_106005_010 0.1660755748 - - EG5651 [Manihot esculenta]
20 Hb_006487_060 0.1661971201 - - Defective in cullin neddylation protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000120_190 Hb_000120_190 Hb_002482_060 Hb_002482_060 Hb_000120_190--Hb_002482_060 Hb_010368_030 Hb_010368_030 Hb_000120_190--Hb_010368_030 Hb_175976_010 Hb_175976_010 Hb_000120_190--Hb_175976_010 Hb_166480_010 Hb_166480_010 Hb_000120_190--Hb_166480_010 Hb_029142_020 Hb_029142_020 Hb_000120_190--Hb_029142_020 Hb_006198_090 Hb_006198_090 Hb_000120_190--Hb_006198_090 Hb_005731_140 Hb_005731_140 Hb_002482_060--Hb_005731_140 Hb_002482_060--Hb_166480_010 Hb_002482_060--Hb_006198_090 Hb_106005_010 Hb_106005_010 Hb_002482_060--Hb_106005_010 Hb_007763_060 Hb_007763_060 Hb_002482_060--Hb_007763_060 Hb_010368_030--Hb_175976_010 Hb_000086_190 Hb_000086_190 Hb_010368_030--Hb_000086_190 Hb_007534_020 Hb_007534_020 Hb_010368_030--Hb_007534_020 Hb_007763_050 Hb_007763_050 Hb_010368_030--Hb_007763_050 Hb_010368_030--Hb_166480_010 Hb_008221_110 Hb_008221_110 Hb_175976_010--Hb_008221_110 Hb_175976_010--Hb_007534_020 Hb_000127_090 Hb_000127_090 Hb_175976_010--Hb_000127_090 Hb_001017_060 Hb_001017_060 Hb_175976_010--Hb_001017_060 Hb_001396_250 Hb_001396_250 Hb_166480_010--Hb_001396_250 Hb_000015_070 Hb_000015_070 Hb_166480_010--Hb_000015_070 Hb_166480_010--Hb_007763_050 Hb_005085_030 Hb_005085_030 Hb_166480_010--Hb_005085_030 Hb_011214_100 Hb_011214_100 Hb_029142_020--Hb_011214_100 Hb_029142_020--Hb_006198_090 Hb_030982_020 Hb_030982_020 Hb_029142_020--Hb_030982_020 Hb_011037_020 Hb_011037_020 Hb_029142_020--Hb_011037_020 Hb_029142_020--Hb_010368_030 Hb_003656_150 Hb_003656_150 Hb_006198_090--Hb_003656_150 Hb_001998_140 Hb_001998_140 Hb_006198_090--Hb_001998_140 Hb_007188_030 Hb_007188_030 Hb_006198_090--Hb_007188_030 Hb_177103_010 Hb_177103_010 Hb_006198_090--Hb_177103_010 Hb_169170_010 Hb_169170_010 Hb_006198_090--Hb_169170_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
115.907 25.7323 26.1722 726.779 90.7742 1644.37
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
518.345 514.425 483.969 171.313 67.0178

CAGE analysis