Hb_130613_010

Information

Type -
Description -
Location Contig130613: 245-808
Sequence    

Annotation

kegg
ID rcu:RCOM_0653440
description Charged multivesicular body protein 2a, putative
nr
ID XP_002521345.1
description Charged multivesicular body protein 2a, putative [Ricinus communis]
swissprot
ID Q9SKI2
description Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2
trembl
ID B9S5S6
description Charged multivesicular body protein 2a, putative OS=Ricinus communis GN=RCOM_0653440 PE=4 SV=1
Gene Ontology
ID GO:0007034
description vacuolar protein sorting-associated protein 2 homolog 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130613_010 0.0 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
2 Hb_000111_030 0.1225136187 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
3 Hb_133724_010 0.1341793688 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011671_480 0.1423429394 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000363_330 0.1426035336 - - -
6 Hb_001911_040 0.1427971457 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
7 Hb_005686_120 0.1462664111 - - -
8 Hb_011942_010 0.1462749238 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001195_410 0.1505012826 - - PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase [Jatropha curcas]
10 Hb_001747_030 0.1515862728 - - hypothetical protein F383_08210 [Gossypium arboreum]
11 Hb_001829_040 0.1519815449 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
12 Hb_002388_010 0.1569631697 - - -
13 Hb_005539_310 0.1572534254 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
14 Hb_118507_010 0.1589023407 - - hypothetical protein VITISV_019292 [Vitis vinifera]
15 Hb_006117_060 0.1591444781 - - hypothetical protein CARUB_v10024452mg [Capsella rubella]
16 Hb_002192_090 0.1594881657 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
17 Hb_085972_010 0.159786308 transcription factor TF Family: NAC NAC transcription factor 066 [Jatropha curcas]
18 Hb_001396_110 0.1629430585 - - DNA primase large subunit, putative [Ricinus communis]
19 Hb_000172_510 0.1642485835 - - hypothetical protein B456_007G243100 [Gossypium raimondii]
20 Hb_002344_130 0.1644697822 - - PREDICTED: copper transporter 5 [Jatropha curcas]

Gene co-expression network

sample Hb_130613_010 Hb_130613_010 Hb_000111_030 Hb_000111_030 Hb_130613_010--Hb_000111_030 Hb_133724_010 Hb_133724_010 Hb_130613_010--Hb_133724_010 Hb_011671_480 Hb_011671_480 Hb_130613_010--Hb_011671_480 Hb_000363_330 Hb_000363_330 Hb_130613_010--Hb_000363_330 Hb_001911_040 Hb_001911_040 Hb_130613_010--Hb_001911_040 Hb_005686_120 Hb_005686_120 Hb_130613_010--Hb_005686_120 Hb_002388_010 Hb_002388_010 Hb_000111_030--Hb_002388_010 Hb_001747_030 Hb_001747_030 Hb_000111_030--Hb_001747_030 Hb_182713_020 Hb_182713_020 Hb_000111_030--Hb_182713_020 Hb_002344_130 Hb_002344_130 Hb_000111_030--Hb_002344_130 Hb_002192_090 Hb_002192_090 Hb_000111_030--Hb_002192_090 Hb_133724_010--Hb_002192_090 Hb_133724_010--Hb_002388_010 Hb_099878_050 Hb_099878_050 Hb_133724_010--Hb_099878_050 Hb_001829_040 Hb_001829_040 Hb_133724_010--Hb_001829_040 Hb_001518_070 Hb_001518_070 Hb_133724_010--Hb_001518_070 Hb_011671_480--Hb_001829_040 Hb_000538_240 Hb_000538_240 Hb_011671_480--Hb_000538_240 Hb_011671_480--Hb_001911_040 Hb_000260_720 Hb_000260_720 Hb_011671_480--Hb_000260_720 Hb_002983_080 Hb_002983_080 Hb_011671_480--Hb_002983_080 Hb_000331_090 Hb_000331_090 Hb_011671_480--Hb_000331_090 Hb_000363_330--Hb_001911_040 Hb_004883_050 Hb_004883_050 Hb_000363_330--Hb_004883_050 Hb_012760_130 Hb_012760_130 Hb_000363_330--Hb_012760_130 Hb_066913_010 Hb_066913_010 Hb_000363_330--Hb_066913_010 Hb_145629_010 Hb_145629_010 Hb_000363_330--Hb_145629_010 Hb_009545_090 Hb_009545_090 Hb_001911_040--Hb_009545_090 Hb_001911_040--Hb_000538_240 Hb_000743_030 Hb_000743_030 Hb_001911_040--Hb_000743_030 Hb_001911_040--Hb_001829_040 Hb_000357_110 Hb_000357_110 Hb_001911_040--Hb_000357_110 Hb_005686_120--Hb_001829_040 Hb_005686_120--Hb_011671_480 Hb_085972_010 Hb_085972_010 Hb_005686_120--Hb_085972_010 Hb_005686_120--Hb_000260_720 Hb_005686_120--Hb_002983_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.4369 231.777 172.944 573.12 71.0576 239.818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
118.07 226.806 98.5513 79.3671 32.4357

CAGE analysis