Hb_143629_160

Information

Type -
Description -
Location Contig143629: 103291-104786
Sequence    

Annotation

kegg
ID rcu:RCOM_1436980
description nitrate transporter, putative
nr
ID XP_002512591.1
description nitrate transporter, putative [Ricinus communis]
swissprot
ID Q56XQ6
description Protein NRT1/ PTR FAMILY 4.4 OS=Arabidopsis thaliana GN=NPF4.4 PE=2 SV=1
trembl
ID B9RFS2
description Nitrate transporter, putative OS=Ricinus communis GN=RCOM_1436980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143629_160 0.0 - - nitrate transporter, putative [Ricinus communis]
2 Hb_000563_580 0.0880568838 - - acyltransferase, putative [Ricinus communis]
3 Hb_000640_180 0.0951238646 - - enzyme inhibitor, putative [Ricinus communis]
4 Hb_000046_530 0.103170642 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF086 [Jatropha curcas]
5 Hb_102748_010 0.1344460658 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
6 Hb_176082_010 0.2573447786 - - PREDICTED: pirin-like protein [Jatropha curcas]
7 Hb_066415_010 0.293683769 - - -
8 Hb_148777_020 0.2940865089 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 isoform X1 [Populus euphratica]
9 Hb_000553_070 0.2984324241 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X2 [Jatropha curcas]
10 Hb_003517_030 0.3167986852 - - PREDICTED: putative glycerol-3-phosphate transporter 5 isoform X2 [Eucalyptus grandis]
11 Hb_005654_020 0.3313287398 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_009815_010 0.3628050624 - - -
13 Hb_003581_160 0.4034611761 - - -
14 Hb_012366_010 0.4035491586 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
15 Hb_001823_080 0.4053652507 - - hypothetical protein VITISV_012142 [Vitis vinifera]
16 Hb_004266_010 0.4060693341 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
17 Hb_013394_090 0.4091252487 - - conserved hypothetical protein [Ricinus communis]
18 Hb_089785_010 0.4111517312 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Fragaria vesca subsp. vesca]
19 Hb_002740_070 0.4130373073 - - nitrate transporter, putative [Ricinus communis]
20 Hb_005181_200 0.4178268654 transcription factor TF Family: GRAS PREDICTED: DELLA protein RGL1-like [Jatropha curcas]

Gene co-expression network

sample Hb_143629_160 Hb_143629_160 Hb_000563_580 Hb_000563_580 Hb_143629_160--Hb_000563_580 Hb_000640_180 Hb_000640_180 Hb_143629_160--Hb_000640_180 Hb_000046_530 Hb_000046_530 Hb_143629_160--Hb_000046_530 Hb_102748_010 Hb_102748_010 Hb_143629_160--Hb_102748_010 Hb_176082_010 Hb_176082_010 Hb_143629_160--Hb_176082_010 Hb_066415_010 Hb_066415_010 Hb_143629_160--Hb_066415_010 Hb_000563_580--Hb_000640_180 Hb_000563_580--Hb_000046_530 Hb_000563_580--Hb_102748_010 Hb_000563_580--Hb_176082_010 Hb_148777_020 Hb_148777_020 Hb_000563_580--Hb_148777_020 Hb_000640_180--Hb_000046_530 Hb_000640_180--Hb_102748_010 Hb_000640_180--Hb_176082_010 Hb_000640_180--Hb_148777_020 Hb_000046_530--Hb_102748_010 Hb_000046_530--Hb_176082_010 Hb_000046_530--Hb_148777_020 Hb_102748_010--Hb_176082_010 Hb_102748_010--Hb_148777_020 Hb_176082_010--Hb_148777_020 Hb_003517_030 Hb_003517_030 Hb_176082_010--Hb_003517_030 Hb_012366_010 Hb_012366_010 Hb_176082_010--Hb_012366_010 Hb_089785_010 Hb_089785_010 Hb_176082_010--Hb_089785_010 Hb_009815_010 Hb_009815_010 Hb_066415_010--Hb_009815_010 Hb_066415_010--Hb_000563_580 Hb_004266_010 Hb_004266_010 Hb_066415_010--Hb_004266_010 Hb_066415_010--Hb_000640_180 Hb_066415_010--Hb_000046_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0478762 0.0861141 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis