Hb_004266_010

Information

Type -
Description -
Location Contig4266: 11039-19369
Sequence    

Annotation

kegg
ID tcc:TCM_019247
description hypothetical protein
nr
ID XP_012487705.1
description PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID A0A061EG57
description Uncharacterized protein OS=Theobroma cacao GN=TCM_019247 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004266_010 0.0 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
2 Hb_000679_160 0.2590153008 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
3 Hb_005181_200 0.3129072333 transcription factor TF Family: GRAS PREDICTED: DELLA protein RGL1-like [Jatropha curcas]
4 Hb_066415_010 0.3208242436 - - -
5 Hb_176012_010 0.3262519008 - - conserved hypothetical protein [Ricinus communis]
6 Hb_121921_010 0.3382002628 - - -
7 Hb_000076_170 0.3421229239 - - hypothetical protein JCGZ_00832 [Jatropha curcas]
8 Hb_118707_010 0.3427781772 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
9 Hb_002588_020 0.3528821557 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
10 Hb_011344_100 0.3573185635 - - -
11 Hb_022425_010 0.3638080896 - - Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative [Ricinus communis]
12 Hb_008891_010 0.3677129812 - - hypothetical protein EUGRSUZ_D01145 [Eucalyptus grandis]
13 Hb_001269_280 0.3683223004 - - -
14 Hb_003117_050 0.3847142053 - - -
15 Hb_003581_160 0.3931712663 - - -
16 Hb_000563_580 0.4031649873 - - acyltransferase, putative [Ricinus communis]
17 Hb_000640_180 0.4036261539 - - enzyme inhibitor, putative [Ricinus communis]
18 Hb_000046_530 0.4042764845 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF086 [Jatropha curcas]
19 Hb_143629_160 0.4060693341 - - nitrate transporter, putative [Ricinus communis]
20 Hb_102748_010 0.4080599543 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]

Gene co-expression network

sample Hb_004266_010 Hb_004266_010 Hb_000679_160 Hb_000679_160 Hb_004266_010--Hb_000679_160 Hb_005181_200 Hb_005181_200 Hb_004266_010--Hb_005181_200 Hb_066415_010 Hb_066415_010 Hb_004266_010--Hb_066415_010 Hb_176012_010 Hb_176012_010 Hb_004266_010--Hb_176012_010 Hb_121921_010 Hb_121921_010 Hb_004266_010--Hb_121921_010 Hb_000076_170 Hb_000076_170 Hb_004266_010--Hb_000076_170 Hb_000367_040 Hb_000367_040 Hb_000679_160--Hb_000367_040 Hb_001205_270 Hb_001205_270 Hb_000679_160--Hb_001205_270 Hb_001269_280 Hb_001269_280 Hb_000679_160--Hb_001269_280 Hb_003517_030 Hb_003517_030 Hb_000679_160--Hb_003517_030 Hb_148777_020 Hb_148777_020 Hb_000679_160--Hb_148777_020 Hb_011344_100 Hb_011344_100 Hb_005181_200--Hb_011344_100 Hb_005181_200--Hb_121921_010 Hb_000230_310 Hb_000230_310 Hb_005181_200--Hb_000230_310 Hb_115116_010 Hb_115116_010 Hb_005181_200--Hb_115116_010 Hb_002740_070 Hb_002740_070 Hb_005181_200--Hb_002740_070 Hb_009815_010 Hb_009815_010 Hb_066415_010--Hb_009815_010 Hb_143629_160 Hb_143629_160 Hb_066415_010--Hb_143629_160 Hb_000563_580 Hb_000563_580 Hb_066415_010--Hb_000563_580 Hb_000640_180 Hb_000640_180 Hb_066415_010--Hb_000640_180 Hb_000046_530 Hb_000046_530 Hb_066415_010--Hb_000046_530 Hb_118707_010 Hb_118707_010 Hb_176012_010--Hb_118707_010 Hb_001862_020 Hb_001862_020 Hb_176012_010--Hb_001862_020 Hb_146361_020 Hb_146361_020 Hb_176012_010--Hb_146361_020 Hb_003407_020 Hb_003407_020 Hb_176012_010--Hb_003407_020 Hb_186115_010 Hb_186115_010 Hb_176012_010--Hb_186115_010 Hb_002903_030 Hb_002903_030 Hb_176012_010--Hb_002903_030 Hb_004208_020 Hb_004208_020 Hb_121921_010--Hb_004208_020 Hb_002437_010 Hb_002437_010 Hb_121921_010--Hb_002437_010 Hb_000147_010 Hb_000147_010 Hb_121921_010--Hb_000147_010 Hb_121921_010--Hb_011344_100 Hb_000544_130 Hb_000544_130 Hb_121921_010--Hb_000544_130 Hb_002188_020 Hb_002188_020 Hb_000076_170--Hb_002188_020 Hb_011928_010 Hb_011928_010 Hb_000076_170--Hb_011928_010 Hb_003117_050 Hb_003117_050 Hb_000076_170--Hb_003117_050 Hb_001524_100 Hb_001524_100 Hb_000076_170--Hb_001524_100 Hb_136872_010 Hb_136872_010 Hb_000076_170--Hb_136872_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00455253 0.00612627 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00433052 0

CAGE analysis