Hb_115116_010

Information

Type -
Description -
Location Contig115116: 2-829
Sequence    

Annotation

kegg
ID mdm:103428670
description G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1
nr
ID XP_012084625.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
swissprot
ID O64770
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g61490 OS=Arabidopsis thaliana GN=At1g61490 PE=3 SV=1
trembl
ID A0A067K6D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20198 PE=4 SV=1
Gene Ontology
ID GO:0004672
description g-type lectin s-receptor-like serine threonine-protein kinase rks1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115116_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
2 Hb_170516_010 0.1770415001 - - hypothetical protein MTR_001s0023 [Medicago truncatula]
3 Hb_001907_130 0.203502546 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
4 Hb_011344_100 0.243431897 - - -
5 Hb_000413_150 0.2458101807 - - PREDICTED: uncharacterized protein LOC103709996 [Phoenix dactylifera]
6 Hb_005675_060 0.2526283729 - - PREDICTED: protein NIM1-INTERACTING 2 [Jatropha curcas]
7 Hb_014919_020 0.266442846 - - -
8 Hb_135569_010 0.2681290078 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
9 Hb_002217_410 0.2695465151 - - hypothetical protein L484_027883 [Morus notabilis]
10 Hb_131864_030 0.2738707634 transcription factor TF Family: C2H2 transcription factor, putative [Ricinus communis]
11 Hb_000820_160 0.2745273636 - - -
12 Hb_004945_020 0.2788117938 - - PREDICTED: probable calcium-binding protein CML30 [Vitis vinifera]
13 Hb_000104_070 0.2811248056 - - PREDICTED: citrate-binding protein-like [Jatropha curcas]
14 Hb_065452_010 0.2919104197 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003740_010 0.2963614798 - - conserved hypothetical protein [Ricinus communis]
16 Hb_115445_010 0.2986979404 - - -
17 Hb_133605_010 0.2997103141 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
18 Hb_000739_230 0.299865612 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
19 Hb_000803_310 0.3051251867 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
20 Hb_002805_100 0.3085684476 - - Receptor-like protein 12 [Morus notabilis]

Gene co-expression network

sample Hb_115116_010 Hb_115116_010 Hb_170516_010 Hb_170516_010 Hb_115116_010--Hb_170516_010 Hb_001907_130 Hb_001907_130 Hb_115116_010--Hb_001907_130 Hb_011344_100 Hb_011344_100 Hb_115116_010--Hb_011344_100 Hb_000413_150 Hb_000413_150 Hb_115116_010--Hb_000413_150 Hb_005675_060 Hb_005675_060 Hb_115116_010--Hb_005675_060 Hb_014919_020 Hb_014919_020 Hb_115116_010--Hb_014919_020 Hb_170516_010--Hb_011344_100 Hb_170516_010--Hb_001907_130 Hb_135569_010 Hb_135569_010 Hb_170516_010--Hb_135569_010 Hb_001749_030 Hb_001749_030 Hb_170516_010--Hb_001749_030 Hb_115445_010 Hb_115445_010 Hb_170516_010--Hb_115445_010 Hb_001907_130--Hb_011344_100 Hb_001907_130--Hb_005675_060 Hb_065452_010 Hb_065452_010 Hb_001907_130--Hb_065452_010 Hb_000803_310 Hb_000803_310 Hb_001907_130--Hb_000803_310 Hb_011344_100--Hb_065452_010 Hb_033594_090 Hb_033594_090 Hb_011344_100--Hb_033594_090 Hb_005464_010 Hb_005464_010 Hb_011344_100--Hb_005464_010 Hb_000197_170 Hb_000197_170 Hb_000413_150--Hb_000197_170 Hb_000413_150--Hb_014919_020 Hb_000406_010 Hb_000406_010 Hb_000413_150--Hb_000406_010 Hb_093385_010 Hb_093385_010 Hb_000413_150--Hb_093385_010 Hb_188411_010 Hb_188411_010 Hb_000413_150--Hb_188411_010 Hb_005675_060--Hb_000803_310 Hb_004945_020 Hb_004945_020 Hb_005675_060--Hb_004945_020 Hb_027472_130 Hb_027472_130 Hb_005675_060--Hb_027472_130 Hb_000401_010 Hb_000401_010 Hb_005675_060--Hb_000401_010 Hb_131864_030 Hb_131864_030 Hb_005675_060--Hb_131864_030 Hb_161023_010 Hb_161023_010 Hb_014919_020--Hb_161023_010 Hb_000816_010 Hb_000816_010 Hb_014919_020--Hb_000816_010 Hb_014919_020--Hb_188411_010 Hb_059301_010 Hb_059301_010 Hb_014919_020--Hb_059301_010 Hb_005568_100 Hb_005568_100 Hb_014919_020--Hb_005568_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0382307 0.142423 0.356847 0.30945 0.328137 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.141889 0

CAGE analysis