Hb_005464_010

Information

Type -
Description -
Location Contig5464: 2043-3322
Sequence    

Annotation

kegg
ID rcu:RCOM_1595970
description Thioredoxin H-type, putative
nr
ID XP_002510456.1
description Thioredoxin H-type, putative [Ricinus communis]
swissprot
ID Q43636
description Thioredoxin H-type OS=Ricinus communis PE=3 SV=1
trembl
ID B9R813
description Thioredoxin H-type, putative OS=Ricinus communis GN=RCOM_1595970 PE=4 SV=1
Gene Ontology
ID GO:0015035
description thioredoxin h-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005464_010 0.0 - - Thioredoxin H-type, putative [Ricinus communis]
2 Hb_001369_530 0.1610041225 - - 21 kDa protein precursor, putative [Ricinus communis]
3 Hb_000270_550 0.1765704265 - - -
4 Hb_004631_030 0.1827204446 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
5 Hb_000510_210 0.1832783385 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
6 Hb_000566_170 0.1838906323 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
7 Hb_002054_090 0.1898993966 - - PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]
8 Hb_012516_030 0.197923552 - - PREDICTED: non-specific lipid-transfer protein 2 {ECO:0000303
9 Hb_106728_020 0.1983315071 - - cytochrome P450, putative [Ricinus communis]
10 Hb_000297_220 0.2017648845 - - SAUR family protein [Theobroma cacao]
11 Hb_001269_280 0.2018867883 - - -
12 Hb_001821_030 0.2076687054 - - hypothetical protein JCGZ_13357 [Jatropha curcas]
13 Hb_000956_060 0.2089478794 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
14 Hb_179118_010 0.2105961928 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
15 Hb_080068_010 0.2140154939 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
16 Hb_005144_100 0.2227376389 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
17 Hb_000189_070 0.2236118696 transcription factor TF Family: AUX/IAA Auxin-induced protein 22D, putative [Ricinus communis]
18 Hb_011206_050 0.224998035 - - hypothetical protein POPTR_0011s02840g [Populus trichocarpa]
19 Hb_012395_150 0.2260556322 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
20 Hb_004590_010 0.2288242621 - - hypothetical protein JCGZ_17178 [Jatropha curcas]

Gene co-expression network

sample Hb_005464_010 Hb_005464_010 Hb_001369_530 Hb_001369_530 Hb_005464_010--Hb_001369_530 Hb_000270_550 Hb_000270_550 Hb_005464_010--Hb_000270_550 Hb_004631_030 Hb_004631_030 Hb_005464_010--Hb_004631_030 Hb_000510_210 Hb_000510_210 Hb_005464_010--Hb_000510_210 Hb_000566_170 Hb_000566_170 Hb_005464_010--Hb_000566_170 Hb_002054_090 Hb_002054_090 Hb_005464_010--Hb_002054_090 Hb_001369_530--Hb_000270_550 Hb_001821_030 Hb_001821_030 Hb_001369_530--Hb_001821_030 Hb_012395_150 Hb_012395_150 Hb_001369_530--Hb_012395_150 Hb_012879_010 Hb_012879_010 Hb_001369_530--Hb_012879_010 Hb_179118_010 Hb_179118_010 Hb_001369_530--Hb_179118_010 Hb_183820_010 Hb_183820_010 Hb_001369_530--Hb_183820_010 Hb_000174_020 Hb_000174_020 Hb_000270_550--Hb_000174_020 Hb_000270_550--Hb_179118_010 Hb_000270_550--Hb_000510_210 Hb_106728_020 Hb_106728_020 Hb_000270_550--Hb_106728_020 Hb_000270_550--Hb_012879_010 Hb_000297_220 Hb_000297_220 Hb_004631_030--Hb_000297_220 Hb_012516_030 Hb_012516_030 Hb_004631_030--Hb_012516_030 Hb_004631_030--Hb_000566_170 Hb_000956_060 Hb_000956_060 Hb_004631_030--Hb_000956_060 Hb_004631_030--Hb_000510_210 Hb_004631_030--Hb_002054_090 Hb_000510_210--Hb_000566_170 Hb_000510_210--Hb_106728_020 Hb_000510_210--Hb_179118_010 Hb_000510_210--Hb_012516_030 Hb_011206_050 Hb_011206_050 Hb_000510_210--Hb_011206_050 Hb_000566_170--Hb_106728_020 Hb_000566_170--Hb_179118_010 Hb_000566_170--Hb_012516_030 Hb_000566_170--Hb_011206_050 Hb_041063_010 Hb_041063_010 Hb_002054_090--Hb_041063_010 Hb_002054_090--Hb_000297_220 Hb_060236_010 Hb_060236_010 Hb_002054_090--Hb_060236_010 Hb_004241_050 Hb_004241_050 Hb_002054_090--Hb_004241_050 Hb_000059_110 Hb_000059_110 Hb_002054_090--Hb_000059_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.255219 0.0808508 0.749493 0.0932333 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.337191 0

CAGE analysis