Hb_106728_020

Information

Type -
Description -
Location Contig106728: 4202-6083
Sequence    

Annotation

kegg
ID rcu:RCOM_1583450
description cytochrome P450, putative (EC:1.3.3.9)
nr
ID XP_002513695.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID Q2QYH7
description Cytochrome P450 714C2 OS=Oryza sativa subsp. japonica GN=CYP714C2 PE=2 SV=1
trembl
ID B9RIX6
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_1583450 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytokinin hydroxylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106728_020 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_000510_210 0.0605507694 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
3 Hb_000566_170 0.0688180363 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
4 Hb_179118_010 0.0846365017 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
5 Hb_004590_010 0.1111342547 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
6 Hb_148914_020 0.121090827 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
7 Hb_005900_020 0.1252574342 - - -
8 Hb_004631_030 0.1255685724 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
9 Hb_000002_230 0.1340302315 - - RING/U-box superfamily protein [Theobroma cacao]
10 Hb_002894_040 0.1387348889 - - conserved hypothetical protein [Ricinus communis]
11 Hb_012395_150 0.1397693353 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
12 Hb_011206_050 0.1459009046 - - hypothetical protein POPTR_0011s02840g [Populus trichocarpa]
13 Hb_000203_150 0.1467666077 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
14 Hb_001013_060 0.149948752 - - -
15 Hb_000270_550 0.1502521898 - - -
16 Hb_012879_010 0.1514226891 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001369_530 0.151970001 - - 21 kDa protein precursor, putative [Ricinus communis]
18 Hb_012516_030 0.1531535844 - - PREDICTED: non-specific lipid-transfer protein 2 {ECO:0000303
19 Hb_004218_220 0.1541865993 - - o-methyltransferase, putative [Ricinus communis]
20 Hb_001213_080 0.1550887303 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]

Gene co-expression network

sample Hb_106728_020 Hb_106728_020 Hb_000510_210 Hb_000510_210 Hb_106728_020--Hb_000510_210 Hb_000566_170 Hb_000566_170 Hb_106728_020--Hb_000566_170 Hb_179118_010 Hb_179118_010 Hb_106728_020--Hb_179118_010 Hb_004590_010 Hb_004590_010 Hb_106728_020--Hb_004590_010 Hb_148914_020 Hb_148914_020 Hb_106728_020--Hb_148914_020 Hb_005900_020 Hb_005900_020 Hb_106728_020--Hb_005900_020 Hb_000510_210--Hb_000566_170 Hb_004631_030 Hb_004631_030 Hb_000510_210--Hb_004631_030 Hb_000510_210--Hb_179118_010 Hb_012516_030 Hb_012516_030 Hb_000510_210--Hb_012516_030 Hb_011206_050 Hb_011206_050 Hb_000510_210--Hb_011206_050 Hb_000566_170--Hb_004631_030 Hb_000566_170--Hb_179118_010 Hb_000566_170--Hb_012516_030 Hb_000566_170--Hb_011206_050 Hb_179118_010--Hb_004590_010 Hb_012395_150 Hb_012395_150 Hb_179118_010--Hb_012395_150 Hb_012879_010 Hb_012879_010 Hb_179118_010--Hb_012879_010 Hb_179118_010--Hb_005900_020 Hb_004590_010--Hb_012395_150 Hb_004590_010--Hb_012879_010 Hb_004590_010--Hb_005900_020 Hb_000002_230 Hb_000002_230 Hb_004590_010--Hb_000002_230 Hb_001213_080 Hb_001213_080 Hb_148914_020--Hb_001213_080 Hb_000128_090 Hb_000128_090 Hb_148914_020--Hb_000128_090 Hb_148914_020--Hb_005900_020 Hb_007313_050 Hb_007313_050 Hb_148914_020--Hb_007313_050 Hb_072670_010 Hb_072670_010 Hb_148914_020--Hb_072670_010 Hb_066350_010 Hb_066350_010 Hb_005900_020--Hb_066350_010 Hb_021443_020 Hb_021443_020 Hb_005900_020--Hb_021443_020 Hb_035006_010 Hb_035006_010 Hb_005900_020--Hb_035006_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.23375 0.358667 2.6464 0 0.0230406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.951033 0

CAGE analysis