Hb_000413_150

Information

Type -
Description -
Location Contig413: 148053-148463
Sequence    

Annotation

kegg
ID pda:103709996
description uncharacterized LOC103709996
nr
ID XP_008793775.1
description PREDICTED: uncharacterized protein LOC103709996 [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID A5AEQ9
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013440 PE=4 SV=1
Gene Ontology
ID GO:0003950
description PREDICTED: uncharacterized protein LOC104604941

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40930: 149403-150957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_150 0.0 - - PREDICTED: uncharacterized protein LOC103709996 [Phoenix dactylifera]
2 Hb_000197_170 0.1731723048 - - ATP binding protein, putative [Ricinus communis]
3 Hb_014919_020 0.1957513104 - - -
4 Hb_000406_010 0.222253046 - - PREDICTED: uncharacterized protein LOC105647846 [Jatropha curcas]
5 Hb_093385_010 0.2358008631 - - PREDICTED: probable mannitol dehydrogenase [Pyrus x bretschneideri]
6 Hb_188411_010 0.2414360435 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
7 Hb_115116_010 0.2458101807 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
8 Hb_002343_030 0.2609203723 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000302_070 0.2631303716 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
10 Hb_133605_010 0.2657294353 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
11 Hb_000739_230 0.2711784775 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
12 Hb_000820_160 0.2721693495 - - -
13 Hb_003032_060 0.275709808 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
14 Hb_006973_060 0.2776513451 - - Uncharacterized protein TCM_038475 [Theobroma cacao]
15 Hb_005601_030 0.2813597594 - - organic anion transporter, putative [Ricinus communis]
16 Hb_000816_010 0.2850139284 - - PREDICTED: uncharacterized protein At2g40430 isoform X2 [Jatropha curcas]
17 Hb_011485_080 0.2852332462 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
18 Hb_005568_100 0.2853910896 - - vacuolar proton ATPase a3-like protein [Medicago truncatula]
19 Hb_000320_050 0.2856209839 - - bcr-associated protein, bap, putative [Ricinus communis]
20 Hb_002325_030 0.2857199983 - - PREDICTED: glucan endo-1,3-beta-glucosidase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000413_150 Hb_000413_150 Hb_000197_170 Hb_000197_170 Hb_000413_150--Hb_000197_170 Hb_014919_020 Hb_014919_020 Hb_000413_150--Hb_014919_020 Hb_000406_010 Hb_000406_010 Hb_000413_150--Hb_000406_010 Hb_093385_010 Hb_093385_010 Hb_000413_150--Hb_093385_010 Hb_188411_010 Hb_188411_010 Hb_000413_150--Hb_188411_010 Hb_115116_010 Hb_115116_010 Hb_000413_150--Hb_115116_010 Hb_003032_060 Hb_003032_060 Hb_000197_170--Hb_003032_060 Hb_005276_030 Hb_005276_030 Hb_000197_170--Hb_005276_030 Hb_047560_010 Hb_047560_010 Hb_000197_170--Hb_047560_010 Hb_096473_010 Hb_096473_010 Hb_000197_170--Hb_096473_010 Hb_000197_170--Hb_093385_010 Hb_161023_010 Hb_161023_010 Hb_014919_020--Hb_161023_010 Hb_000816_010 Hb_000816_010 Hb_014919_020--Hb_000816_010 Hb_014919_020--Hb_188411_010 Hb_059301_010 Hb_059301_010 Hb_014919_020--Hb_059301_010 Hb_005568_100 Hb_005568_100 Hb_014919_020--Hb_005568_100 Hb_000406_010--Hb_093385_010 Hb_000406_010--Hb_188411_010 Hb_133605_010 Hb_133605_010 Hb_000406_010--Hb_133605_010 Hb_002343_030 Hb_002343_030 Hb_000406_010--Hb_002343_030 Hb_000406_010--Hb_000197_170 Hb_093385_010--Hb_002343_030 Hb_000988_010 Hb_000988_010 Hb_093385_010--Hb_000988_010 Hb_000039_080 Hb_000039_080 Hb_093385_010--Hb_000039_080 Hb_000105_110 Hb_000105_110 Hb_093385_010--Hb_000105_110 Hb_187739_010 Hb_187739_010 Hb_093385_010--Hb_187739_010 Hb_188411_010--Hb_161023_010 Hb_160233_020 Hb_160233_020 Hb_188411_010--Hb_160233_020 Hb_188411_010--Hb_133605_010 Hb_011903_010 Hb_011903_010 Hb_188411_010--Hb_011903_010 Hb_170516_010 Hb_170516_010 Hb_115116_010--Hb_170516_010 Hb_001907_130 Hb_001907_130 Hb_115116_010--Hb_001907_130 Hb_011344_100 Hb_011344_100 Hb_115116_010--Hb_011344_100 Hb_005675_060 Hb_005675_060 Hb_115116_010--Hb_005675_060 Hb_115116_010--Hb_014919_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.184002 0.0847412 0.390034 0.356708 0.156313 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0633793 0

CAGE analysis