Hb_001907_130

Information

Type -
Description -
Location Contig1907: 212819-213673
Sequence    

Annotation

kegg
ID rcu:RCOM_0962830
description gd2b, putative
nr
ID XP_012065620.1
description PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
swissprot
ID Q869R1
description CTL-like protein DDB_G0274487 OS=Dictyostelium discoideum GN=DDB_G0274487 PE=3 SV=1
trembl
ID A0A067L539
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16873 PE=4 SV=1
Gene Ontology
ID GO:0016021
description ctl-like protein ddb_g0274487 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19027: 213595-214029
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001907_130 0.0 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
2 Hb_011344_100 0.1737315676 - - -
3 Hb_170516_010 0.1839742645 - - hypothetical protein MTR_001s0023 [Medicago truncatula]
4 Hb_115116_010 0.203502546 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
5 Hb_005675_060 0.2366180921 - - PREDICTED: protein NIM1-INTERACTING 2 [Jatropha curcas]
6 Hb_065452_010 0.2820368668 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000803_310 0.290057352 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
8 Hb_004945_020 0.2901202097 - - PREDICTED: probable calcium-binding protein CML30 [Vitis vinifera]
9 Hb_001749_030 0.2902352146 - - -
10 Hb_000608_220 0.3073681034 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
11 Hb_033594_090 0.3135418135 - - -
12 Hb_143643_010 0.3215844445 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC103967596 [Pyrus x bretschneideri]
13 Hb_010174_140 0.3287850033 - - Alpha-L-fucosidase 2 precursor, putative [Ricinus communis]
14 Hb_001369_310 0.3290997593 - - tonoplast intrinsic protein, putative [Ricinus communis]
15 Hb_005181_200 0.331149362 transcription factor TF Family: GRAS PREDICTED: DELLA protein RGL1-like [Jatropha curcas]
16 Hb_005946_120 0.3419565206 - - peptidase, putative [Ricinus communis]
17 Hb_121921_010 0.3421111599 - - -
18 Hb_163430_010 0.3423707961 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
19 Hb_115445_010 0.3470296532 - - -
20 Hb_001477_040 0.3482382263 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]

Gene co-expression network

sample Hb_001907_130 Hb_001907_130 Hb_011344_100 Hb_011344_100 Hb_001907_130--Hb_011344_100 Hb_170516_010 Hb_170516_010 Hb_001907_130--Hb_170516_010 Hb_115116_010 Hb_115116_010 Hb_001907_130--Hb_115116_010 Hb_005675_060 Hb_005675_060 Hb_001907_130--Hb_005675_060 Hb_065452_010 Hb_065452_010 Hb_001907_130--Hb_065452_010 Hb_000803_310 Hb_000803_310 Hb_001907_130--Hb_000803_310 Hb_011344_100--Hb_170516_010 Hb_011344_100--Hb_115116_010 Hb_011344_100--Hb_065452_010 Hb_033594_090 Hb_033594_090 Hb_011344_100--Hb_033594_090 Hb_005464_010 Hb_005464_010 Hb_011344_100--Hb_005464_010 Hb_170516_010--Hb_115116_010 Hb_135569_010 Hb_135569_010 Hb_170516_010--Hb_135569_010 Hb_001749_030 Hb_001749_030 Hb_170516_010--Hb_001749_030 Hb_115445_010 Hb_115445_010 Hb_170516_010--Hb_115445_010 Hb_000413_150 Hb_000413_150 Hb_115116_010--Hb_000413_150 Hb_115116_010--Hb_005675_060 Hb_014919_020 Hb_014919_020 Hb_115116_010--Hb_014919_020 Hb_005675_060--Hb_000803_310 Hb_004945_020 Hb_004945_020 Hb_005675_060--Hb_004945_020 Hb_027472_130 Hb_027472_130 Hb_005675_060--Hb_027472_130 Hb_000401_010 Hb_000401_010 Hb_005675_060--Hb_000401_010 Hb_131864_030 Hb_131864_030 Hb_005675_060--Hb_131864_030 Hb_001882_150 Hb_001882_150 Hb_065452_010--Hb_001882_150 Hb_065452_010--Hb_115445_010 Hb_002217_490 Hb_002217_490 Hb_065452_010--Hb_002217_490 Hb_030694_010 Hb_030694_010 Hb_065452_010--Hb_030694_010 Hb_065452_010--Hb_005675_060 Hb_163430_010 Hb_163430_010 Hb_000803_310--Hb_163430_010 Hb_001481_010 Hb_001481_010 Hb_000803_310--Hb_001481_010 Hb_005724_050 Hb_005724_050 Hb_000803_310--Hb_005724_050 Hb_000058_050 Hb_000058_050 Hb_000803_310--Hb_000058_050 Hb_000834_050 Hb_000834_050 Hb_000803_310--Hb_000834_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.239043 0.353512 0.27066 0.405697 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.392834 0

CAGE analysis