Hb_170516_010

Information

Type -
Description -
Location Contig170516: 386-627
Sequence    

Annotation

kegg
ID mtr:MTR_001s0023
description hypothetical protein
nr
ID XP_003635698.1
description hypothetical protein MTR_001s0023 [Medicago truncatula]
swissprot
ID -
description -
trembl
ID G7ZUE8
description Athila retroelement ORF1 protein, putative OS=Medicago truncatula GN=MTR_001s0023 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170516_010 0.0 - - hypothetical protein MTR_001s0023 [Medicago truncatula]
2 Hb_115116_010 0.1770415001 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
3 Hb_011344_100 0.1829819215 - - -
4 Hb_001907_130 0.1839742645 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
5 Hb_135569_010 0.2330199891 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
6 Hb_001749_030 0.2589799617 - - -
7 Hb_115445_010 0.2640089218 - - -
8 Hb_002217_410 0.2739195541 - - hypothetical protein L484_027883 [Morus notabilis]
9 Hb_065452_010 0.2801443748 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001862_080 0.2862631638 - - hypothetical protein RCOM_1154950 [Ricinus communis]
11 Hb_002805_100 0.2892938085 - - Receptor-like protein 12 [Morus notabilis]
12 Hb_000104_070 0.3046257766 - - PREDICTED: citrate-binding protein-like [Jatropha curcas]
13 Hb_033594_090 0.3066193019 - - -
14 Hb_005675_060 0.3067864716 - - PREDICTED: protein NIM1-INTERACTING 2 [Jatropha curcas]
15 Hb_045985_010 0.314953801 - - hypothetical protein JCGZ_00291 [Jatropha curcas]
16 Hb_000803_310 0.3218706726 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
17 Hb_001518_060 0.3237473673 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
18 Hb_000659_020 0.3239987004 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
19 Hb_004945_020 0.3240455701 - - PREDICTED: probable calcium-binding protein CML30 [Vitis vinifera]
20 Hb_001489_040 0.3248885452 - - PREDICTED: galactose oxidase [Jatropha curcas]

Gene co-expression network

sample Hb_170516_010 Hb_170516_010 Hb_115116_010 Hb_115116_010 Hb_170516_010--Hb_115116_010 Hb_011344_100 Hb_011344_100 Hb_170516_010--Hb_011344_100 Hb_001907_130 Hb_001907_130 Hb_170516_010--Hb_001907_130 Hb_135569_010 Hb_135569_010 Hb_170516_010--Hb_135569_010 Hb_001749_030 Hb_001749_030 Hb_170516_010--Hb_001749_030 Hb_115445_010 Hb_115445_010 Hb_170516_010--Hb_115445_010 Hb_115116_010--Hb_001907_130 Hb_115116_010--Hb_011344_100 Hb_000413_150 Hb_000413_150 Hb_115116_010--Hb_000413_150 Hb_005675_060 Hb_005675_060 Hb_115116_010--Hb_005675_060 Hb_014919_020 Hb_014919_020 Hb_115116_010--Hb_014919_020 Hb_011344_100--Hb_001907_130 Hb_065452_010 Hb_065452_010 Hb_011344_100--Hb_065452_010 Hb_033594_090 Hb_033594_090 Hb_011344_100--Hb_033594_090 Hb_005464_010 Hb_005464_010 Hb_011344_100--Hb_005464_010 Hb_001907_130--Hb_005675_060 Hb_001907_130--Hb_065452_010 Hb_000803_310 Hb_000803_310 Hb_001907_130--Hb_000803_310 Hb_078160_010 Hb_078160_010 Hb_135569_010--Hb_078160_010 Hb_002217_410 Hb_002217_410 Hb_135569_010--Hb_002217_410 Hb_005548_030 Hb_005548_030 Hb_135569_010--Hb_005548_030 Hb_032990_020 Hb_032990_020 Hb_135569_010--Hb_032990_020 Hb_135569_010--Hb_115116_010 Hb_017524_010 Hb_017524_010 Hb_001749_030--Hb_017524_010 Hb_000659_020 Hb_000659_020 Hb_001749_030--Hb_000659_020 Hb_001373_020 Hb_001373_020 Hb_001749_030--Hb_001373_020 Hb_141142_010 Hb_141142_010 Hb_001749_030--Hb_141142_010 Hb_133508_010 Hb_133508_010 Hb_001749_030--Hb_133508_010 Hb_003712_010 Hb_003712_010 Hb_115445_010--Hb_003712_010 Hb_000635_190 Hb_000635_190 Hb_115445_010--Hb_000635_190 Hb_096878_010 Hb_096878_010 Hb_115445_010--Hb_096878_010 Hb_006721_060 Hb_006721_060 Hb_115445_010--Hb_006721_060 Hb_071433_010 Hb_071433_010 Hb_115445_010--Hb_071433_010 Hb_185830_090 Hb_185830_090 Hb_115445_010--Hb_185830_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.03162 0.96192 1.38886 1.22271 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.520213 0

CAGE analysis