Hb_002217_410

Information

Type -
Description -
Location Contig2217: 336926-337816
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_010111230.1
description hypothetical protein L484_027883 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9SFE5
description Uncharacterized protein OS=Morus notabilis GN=L484_027883 PE=4 SV=1
Gene Ontology
ID GO:0003676
description polynucleotidyl ribonuclease h-like superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_410 0.0 - - hypothetical protein L484_027883 [Morus notabilis]
2 Hb_000104_070 0.0740972175 - - PREDICTED: citrate-binding protein-like [Jatropha curcas]
3 Hb_005016_180 0.1740167634 - - phosphoglycerate kinase, putative [Ricinus communis]
4 Hb_001862_080 0.2097718828 - - hypothetical protein RCOM_1154950 [Ricinus communis]
5 Hb_135569_010 0.2452540504 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
6 Hb_045985_010 0.2588671351 - - hypothetical protein JCGZ_00291 [Jatropha curcas]
7 Hb_000230_310 0.2624330803 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
8 Hb_115116_010 0.2695465151 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
9 Hb_034589_010 0.2726852386 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
10 Hb_170516_010 0.2739195541 - - hypothetical protein MTR_001s0023 [Medicago truncatula]
11 Hb_133605_010 0.2820946238 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
12 Hb_004994_360 0.2882423616 - - PREDICTED: putative ripening-related protein 1 [Populus euphratica]
13 Hb_187739_010 0.2984921413 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
14 Hb_031403_030 0.307492333 - - -
15 Hb_002740_070 0.3091615793 - - nitrate transporter, putative [Ricinus communis]
16 Hb_131864_030 0.3173136648 transcription factor TF Family: C2H2 transcription factor, putative [Ricinus communis]
17 Hb_000988_010 0.3209683719 - - hypothetical protein POPTR_0004s17730g [Populus trichocarpa]
18 Hb_129459_010 0.3230390228 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
19 Hb_008221_130 0.3246904667 - - hypothetical protein VITISV_016971 [Vitis vinifera]
20 Hb_071116_010 0.3264459873 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]

Gene co-expression network

sample Hb_002217_410 Hb_002217_410 Hb_000104_070 Hb_000104_070 Hb_002217_410--Hb_000104_070 Hb_005016_180 Hb_005016_180 Hb_002217_410--Hb_005016_180 Hb_001862_080 Hb_001862_080 Hb_002217_410--Hb_001862_080 Hb_135569_010 Hb_135569_010 Hb_002217_410--Hb_135569_010 Hb_045985_010 Hb_045985_010 Hb_002217_410--Hb_045985_010 Hb_000230_310 Hb_000230_310 Hb_002217_410--Hb_000230_310 Hb_000104_070--Hb_005016_180 Hb_000104_070--Hb_001862_080 Hb_004994_360 Hb_004994_360 Hb_000104_070--Hb_004994_360 Hb_000104_070--Hb_045985_010 Hb_000104_070--Hb_000230_310 Hb_000896_130 Hb_000896_130 Hb_005016_180--Hb_000896_130 Hb_005016_180--Hb_004994_360 Hb_003762_010 Hb_003762_010 Hb_005016_180--Hb_003762_010 Hb_011161_030 Hb_011161_030 Hb_005016_180--Hb_011161_030 Hb_001862_080--Hb_045985_010 Hb_000988_010 Hb_000988_010 Hb_001862_080--Hb_000988_010 Hb_002805_100 Hb_002805_100 Hb_001862_080--Hb_002805_100 Hb_006615_110 Hb_006615_110 Hb_001862_080--Hb_006615_110 Hb_002675_210 Hb_002675_210 Hb_001862_080--Hb_002675_210 Hb_078160_010 Hb_078160_010 Hb_135569_010--Hb_078160_010 Hb_170516_010 Hb_170516_010 Hb_135569_010--Hb_170516_010 Hb_005548_030 Hb_005548_030 Hb_135569_010--Hb_005548_030 Hb_032990_020 Hb_032990_020 Hb_135569_010--Hb_032990_020 Hb_115116_010 Hb_115116_010 Hb_135569_010--Hb_115116_010 Hb_045985_010--Hb_000988_010 Hb_045985_010--Hb_006615_110 Hb_187739_010 Hb_187739_010 Hb_045985_010--Hb_187739_010 Hb_045985_010--Hb_002805_100 Hb_045985_010--Hb_002675_210 Hb_034589_010 Hb_034589_010 Hb_000230_310--Hb_034589_010 Hb_002740_070 Hb_002740_070 Hb_000230_310--Hb_002740_070 Hb_071116_010 Hb_071116_010 Hb_000230_310--Hb_071116_010 Hb_000553_070 Hb_000553_070 Hb_000230_310--Hb_000553_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0237962 0.0641266 0.0474937 0.0570458 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis