Hb_004994_360

Information

Type -
Description -
Location Contig4994: 273376-273939
Sequence    

Annotation

kegg
ID pop:POPTR_0002s16000g
description POPTRDRAFT_552162; hypothetical protein
nr
ID XP_011023354.1
description PREDICTED: putative ripening-related protein 1 [Populus euphratica]
swissprot
ID Q6H5X0
description Putative ripening-related protein 2 OS=Oryza sativa subsp. japonica GN=Os02g0637000 PE=3 SV=1
trembl
ID B9GPZ9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s16000g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45665: 270388-272935
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_360 0.0 - - PREDICTED: putative ripening-related protein 1 [Populus euphratica]
2 Hb_008959_040 0.223718966 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
3 Hb_032202_130 0.2248178451 - - PREDICTED: uncharacterized protein LOC105643062 [Jatropha curcas]
4 Hb_001329_190 0.2473274155 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
5 Hb_005016_180 0.2496752591 - - phosphoglycerate kinase, putative [Ricinus communis]
6 Hb_005211_150 0.2500783618 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38) isoform X1 [Jatropha curcas]
7 Hb_000104_070 0.2625482884 - - PREDICTED: citrate-binding protein-like [Jatropha curcas]
8 Hb_005883_070 0.2640777214 - - PREDICTED: probable myosin-binding protein 5 [Jatropha curcas]
9 Hb_001059_090 0.269025092 - - PREDICTED: F-box protein At1g61340 [Jatropha curcas]
10 Hb_092062_010 0.2704554755 - - hypothetical protein JCGZ_25129 [Jatropha curcas]
11 Hb_001758_130 0.2725146534 - - hypothetical protein JCGZ_25129 [Jatropha curcas]
12 Hb_034310_010 0.2726942373 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
13 Hb_011609_040 0.2750972217 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
14 Hb_131864_030 0.2769094774 transcription factor TF Family: C2H2 transcription factor, putative [Ricinus communis]
15 Hb_004631_200 0.2780100274 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000331_070 0.2786367008 - - PREDICTED: uncharacterized protein LOC105636644 [Jatropha curcas]
17 Hb_006775_070 0.280615459 - - zinc finger protein, putative [Ricinus communis]
18 Hb_001769_110 0.2823265657 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
19 Hb_176472_020 0.2840179151 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000185_230 0.2860898442 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004994_360 Hb_004994_360 Hb_008959_040 Hb_008959_040 Hb_004994_360--Hb_008959_040 Hb_032202_130 Hb_032202_130 Hb_004994_360--Hb_032202_130 Hb_001329_190 Hb_001329_190 Hb_004994_360--Hb_001329_190 Hb_005016_180 Hb_005016_180 Hb_004994_360--Hb_005016_180 Hb_005211_150 Hb_005211_150 Hb_004994_360--Hb_005211_150 Hb_000104_070 Hb_000104_070 Hb_004994_360--Hb_000104_070 Hb_004631_200 Hb_004631_200 Hb_008959_040--Hb_004631_200 Hb_001769_110 Hb_001769_110 Hb_008959_040--Hb_001769_110 Hb_000029_410 Hb_000029_410 Hb_008959_040--Hb_000029_410 Hb_004994_250 Hb_004994_250 Hb_008959_040--Hb_004994_250 Hb_008959_040--Hb_032202_130 Hb_000749_070 Hb_000749_070 Hb_008959_040--Hb_000749_070 Hb_000260_610 Hb_000260_610 Hb_032202_130--Hb_000260_610 Hb_034310_010 Hb_034310_010 Hb_032202_130--Hb_034310_010 Hb_006775_070 Hb_006775_070 Hb_032202_130--Hb_006775_070 Hb_000960_120 Hb_000960_120 Hb_032202_130--Hb_000960_120 Hb_013344_010 Hb_013344_010 Hb_032202_130--Hb_013344_010 Hb_000577_050 Hb_000577_050 Hb_032202_130--Hb_000577_050 Hb_004162_230 Hb_004162_230 Hb_001329_190--Hb_004162_230 Hb_157022_030 Hb_157022_030 Hb_001329_190--Hb_157022_030 Hb_000739_270 Hb_000739_270 Hb_001329_190--Hb_000739_270 Hb_010488_040 Hb_010488_040 Hb_001329_190--Hb_010488_040 Hb_011609_040 Hb_011609_040 Hb_001329_190--Hb_011609_040 Hb_013834_010 Hb_013834_010 Hb_001329_190--Hb_013834_010 Hb_005016_180--Hb_000104_070 Hb_002217_410 Hb_002217_410 Hb_005016_180--Hb_002217_410 Hb_000896_130 Hb_000896_130 Hb_005016_180--Hb_000896_130 Hb_003762_010 Hb_003762_010 Hb_005016_180--Hb_003762_010 Hb_011161_030 Hb_011161_030 Hb_005016_180--Hb_011161_030 Hb_176472_020 Hb_176472_020 Hb_005211_150--Hb_176472_020 Hb_002218_100 Hb_002218_100 Hb_005211_150--Hb_002218_100 Hb_005211_150--Hb_000577_050 Hb_003938_170 Hb_003938_170 Hb_005211_150--Hb_003938_170 Hb_007545_110 Hb_007545_110 Hb_005211_150--Hb_007545_110 Hb_000175_300 Hb_000175_300 Hb_005211_150--Hb_000175_300 Hb_000104_070--Hb_002217_410 Hb_001862_080 Hb_001862_080 Hb_000104_070--Hb_001862_080 Hb_045985_010 Hb_045985_010 Hb_000104_070--Hb_045985_010 Hb_000230_310 Hb_000230_310 Hb_000104_070--Hb_000230_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0476292 0.42211 1.054 0.467375 0.319721 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.11087 0.0871225 0 0 0

CAGE analysis