Hb_003938_170

Information

Type -
Description -
Location Contig3938: 161936-164419
Sequence    

Annotation

kegg
ID rcu:RCOM_0463720
description Desacetoxyvindoline 4-hydroxylase, putative (EC:1.14.11.20)
nr
ID XP_012085337.1
description PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
swissprot
ID Q84MB3
description 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1
trembl
ID A0A067K2S0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17713 PE=3 SV=1
Gene Ontology
ID GO:0046872
description 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39432: 161862-164162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003938_170 0.0 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
2 Hb_003430_040 0.1383298082 - - spermidine synthase 1, putative [Ricinus communis]
3 Hb_003874_010 0.1584330341 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
4 Hb_000032_200 0.1597318808 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
5 Hb_001198_080 0.1640500215 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
6 Hb_001214_190 0.1649025336 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
7 Hb_000347_140 0.1652534151 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_029510_130 0.1659544915 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
9 Hb_004449_140 0.1679016776 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
10 Hb_176472_020 0.1706379386 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003549_130 0.1725598342 - - neutral/alkaline invertase [Manihot esculenta]
12 Hb_074792_010 0.1750443474 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
13 Hb_000732_030 0.1780211296 - - conserved hypothetical protein [Ricinus communis]
14 Hb_038044_010 0.181146829 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
15 Hb_007545_110 0.181501111 - - catalytic, putative [Ricinus communis]
16 Hb_002078_120 0.1838273182 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
17 Hb_000526_010 0.1857502413 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
18 Hb_033594_040 0.1858923925 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
19 Hb_030545_010 0.1862965908 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
20 Hb_004163_030 0.1874094893 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]

Gene co-expression network

sample Hb_003938_170 Hb_003938_170 Hb_003430_040 Hb_003430_040 Hb_003938_170--Hb_003430_040 Hb_003874_010 Hb_003874_010 Hb_003938_170--Hb_003874_010 Hb_000032_200 Hb_000032_200 Hb_003938_170--Hb_000032_200 Hb_001198_080 Hb_001198_080 Hb_003938_170--Hb_001198_080 Hb_001214_190 Hb_001214_190 Hb_003938_170--Hb_001214_190 Hb_000347_140 Hb_000347_140 Hb_003938_170--Hb_000347_140 Hb_074792_010 Hb_074792_010 Hb_003430_040--Hb_074792_010 Hb_003430_040--Hb_000347_140 Hb_003430_040--Hb_003874_010 Hb_000732_030 Hb_000732_030 Hb_003430_040--Hb_000732_030 Hb_003430_040--Hb_000032_200 Hb_000300_710 Hb_000300_710 Hb_003430_040--Hb_000300_710 Hb_000392_450 Hb_000392_450 Hb_003874_010--Hb_000392_450 Hb_002027_320 Hb_002027_320 Hb_003874_010--Hb_002027_320 Hb_007263_010 Hb_007263_010 Hb_003874_010--Hb_007263_010 Hb_004517_030 Hb_004517_030 Hb_003874_010--Hb_004517_030 Hb_003874_010--Hb_000300_710 Hb_001141_050 Hb_001141_050 Hb_000032_200--Hb_001141_050 Hb_003106_200 Hb_003106_200 Hb_000032_200--Hb_003106_200 Hb_000032_200--Hb_000347_140 Hb_012787_030 Hb_012787_030 Hb_000032_200--Hb_012787_030 Hb_000032_200--Hb_000732_030 Hb_000818_120 Hb_000818_120 Hb_001198_080--Hb_000818_120 Hb_001198_080--Hb_003106_200 Hb_001155_050 Hb_001155_050 Hb_001198_080--Hb_001155_050 Hb_003549_130 Hb_003549_130 Hb_001198_080--Hb_003549_130 Hb_002217_190 Hb_002217_190 Hb_001198_080--Hb_002217_190 Hb_004679_040 Hb_004679_040 Hb_001198_080--Hb_004679_040 Hb_004449_140 Hb_004449_140 Hb_001214_190--Hb_004449_140 Hb_000185_230 Hb_000185_230 Hb_001214_190--Hb_000185_230 Hb_124951_010 Hb_124951_010 Hb_001214_190--Hb_124951_010 Hb_001214_190--Hb_003430_040 Hb_143813_020 Hb_143813_020 Hb_001214_190--Hb_143813_020 Hb_000684_100 Hb_000684_100 Hb_001214_190--Hb_000684_100 Hb_000347_140--Hb_074792_010 Hb_000347_140--Hb_000300_710 Hb_188739_010 Hb_188739_010 Hb_000347_140--Hb_188739_010 Hb_000638_260 Hb_000638_260 Hb_000347_140--Hb_000638_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.192298 0.555706 4.18793 0.979229 0.221233 0.227034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.359753 0.28299 0.585301 0.0881509 0.520948

CAGE analysis