Hb_003549_130

Information

Type -
Description -
Location Contig3549: 116974-120868
Sequence    

Annotation

kegg
ID rcu:RCOM_1435720
description beta-fructofuranosidase, putative
nr
ID AFA46813.1
description neutral/alkaline invertase [Manihot esculenta]
swissprot
ID Q9FXA8
description Alkaline/neutral invertase A, mitochondrial OS=Arabidopsis thaliana GN=INVA PE=1 SV=1
trembl
ID H6V7I6
description Neutral/alkaline invertase OS=Manihot esculenta GN=NINV7 PE=2 SV=1
Gene Ontology
ID GO:0005739
description alkaline neutral invertase cinv2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36778: 116805-121107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003549_130 0.0 - - neutral/alkaline invertase [Manihot esculenta]
2 Hb_003106_200 0.1267027099 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
3 Hb_001198_080 0.1380453318 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
4 Hb_015026_020 0.1410812009 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
5 Hb_003430_040 0.1459136629 - - spermidine synthase 1, putative [Ricinus communis]
6 Hb_000032_200 0.1498158997 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
7 Hb_000818_120 0.1510541797 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001214_190 0.1528755604 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
9 Hb_007123_080 0.1579087279 - - big map kinase/bmk, putative [Ricinus communis]
10 Hb_002304_010 0.157974956 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_008173_060 0.1579798873 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
12 Hb_143813_020 0.1581135423 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
13 Hb_000684_100 0.158589746 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
14 Hb_000317_190 0.1606976861 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
15 Hb_000928_250 0.1622231343 - - calcium ion binding protein, putative [Ricinus communis]
16 Hb_000076_100 0.1649365951 - - PREDICTED: septum-promoting GTP-binding protein 1 [Jatropha curcas]
17 Hb_001511_030 0.1649948107 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 [Jatropha curcas]
18 Hb_124951_010 0.1655217862 - - chitinase-like protein [Hevea brasiliensis]
19 Hb_002217_190 0.168331206 - - invertase [Hevea brasiliensis]
20 Hb_029622_030 0.1685197437 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003549_130 Hb_003549_130 Hb_003106_200 Hb_003106_200 Hb_003549_130--Hb_003106_200 Hb_001198_080 Hb_001198_080 Hb_003549_130--Hb_001198_080 Hb_015026_020 Hb_015026_020 Hb_003549_130--Hb_015026_020 Hb_003430_040 Hb_003430_040 Hb_003549_130--Hb_003430_040 Hb_000032_200 Hb_000032_200 Hb_003549_130--Hb_000032_200 Hb_000818_120 Hb_000818_120 Hb_003549_130--Hb_000818_120 Hb_000928_250 Hb_000928_250 Hb_003106_200--Hb_000928_250 Hb_003106_200--Hb_015026_020 Hb_003106_200--Hb_000818_120 Hb_002249_170 Hb_002249_170 Hb_003106_200--Hb_002249_170 Hb_003106_200--Hb_000032_200 Hb_003106_200--Hb_001198_080 Hb_001198_080--Hb_000818_120 Hb_001155_050 Hb_001155_050 Hb_001198_080--Hb_001155_050 Hb_002217_190 Hb_002217_190 Hb_001198_080--Hb_002217_190 Hb_004679_040 Hb_004679_040 Hb_001198_080--Hb_004679_040 Hb_015026_020--Hb_000928_250 Hb_001894_160 Hb_001894_160 Hb_015026_020--Hb_001894_160 Hb_011671_110 Hb_011671_110 Hb_015026_020--Hb_011671_110 Hb_005941_020 Hb_005941_020 Hb_015026_020--Hb_005941_020 Hb_000076_100 Hb_000076_100 Hb_015026_020--Hb_000076_100 Hb_074792_010 Hb_074792_010 Hb_003430_040--Hb_074792_010 Hb_000347_140 Hb_000347_140 Hb_003430_040--Hb_000347_140 Hb_003874_010 Hb_003874_010 Hb_003430_040--Hb_003874_010 Hb_000732_030 Hb_000732_030 Hb_003430_040--Hb_000732_030 Hb_003430_040--Hb_000032_200 Hb_000300_710 Hb_000300_710 Hb_003430_040--Hb_000300_710 Hb_001141_050 Hb_001141_050 Hb_000032_200--Hb_001141_050 Hb_000032_200--Hb_000347_140 Hb_012787_030 Hb_012787_030 Hb_000032_200--Hb_012787_030 Hb_000032_200--Hb_000732_030 Hb_001511_030 Hb_001511_030 Hb_000818_120--Hb_001511_030 Hb_000046_310 Hb_000046_310 Hb_000818_120--Hb_000046_310 Hb_000818_120--Hb_001155_050 Hb_000818_120--Hb_002249_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.18121 14.0193 43.8645 6.19576 1.52113 2.57049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.90507 2.53137 5.72106 4.36505 7.02863

CAGE analysis