Hb_000029_410

Information

Type -
Description -
Location Contig29: 352766-353887
Sequence    

Annotation

kegg
ID rcu:RCOM_0938030
description AT14A, putative
nr
ID XP_002519094.1
description AT14A, putative [Ricinus communis]
swissprot
ID Q9SYZ7
description UPF0496 protein At4g34320 OS=Arabidopsis thaliana GN=At4g34320 PE=2 SV=1
trembl
ID B9RZC5
description AT14A, putative OS=Ricinus communis GN=RCOM_0938030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_410 0.0 - - AT14A, putative [Ricinus communis]
2 Hb_020967_010 0.1611934824 - - -
3 Hb_053519_010 0.1701943604 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
4 Hb_000336_190 0.172134418 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
5 Hb_002053_030 0.1744135421 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
6 Hb_000345_500 0.1747398321 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
7 Hb_002122_030 0.1754581483 - - -
8 Hb_001769_110 0.1757203368 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
9 Hb_000805_040 0.1772384013 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
10 Hb_001863_270 0.1773957559 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
11 Hb_000749_070 0.1783354973 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
12 Hb_003913_030 0.190887152 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
13 Hb_001329_080 0.1910319162 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
14 Hb_007253_010 0.1912551397 - - syntaxin, putative [Ricinus communis]
15 Hb_000594_110 0.1912607951 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
16 Hb_001246_160 0.1937935728 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
17 Hb_002875_070 0.1962852836 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
18 Hb_001472_140 0.1966284257 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
19 Hb_000776_050 0.197253028 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
20 Hb_000853_100 0.1977317507 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF073 [Jatropha curcas]

Gene co-expression network

sample Hb_000029_410 Hb_000029_410 Hb_020967_010 Hb_020967_010 Hb_000029_410--Hb_020967_010 Hb_053519_010 Hb_053519_010 Hb_000029_410--Hb_053519_010 Hb_000336_190 Hb_000336_190 Hb_000029_410--Hb_000336_190 Hb_002053_030 Hb_002053_030 Hb_000029_410--Hb_002053_030 Hb_000345_500 Hb_000345_500 Hb_000029_410--Hb_000345_500 Hb_002122_030 Hb_002122_030 Hb_000029_410--Hb_002122_030 Hb_020967_010--Hb_053519_010 Hb_020967_010--Hb_000336_190 Hb_001472_140 Hb_001472_140 Hb_020967_010--Hb_001472_140 Hb_000003_760 Hb_000003_760 Hb_020967_010--Hb_000003_760 Hb_003531_040 Hb_003531_040 Hb_020967_010--Hb_003531_040 Hb_105660_010 Hb_105660_010 Hb_020967_010--Hb_105660_010 Hb_056196_060 Hb_056196_060 Hb_053519_010--Hb_056196_060 Hb_001329_080 Hb_001329_080 Hb_053519_010--Hb_001329_080 Hb_004724_330 Hb_004724_330 Hb_053519_010--Hb_004724_330 Hb_001246_160 Hb_001246_160 Hb_053519_010--Hb_001246_160 Hb_006615_160 Hb_006615_160 Hb_053519_010--Hb_006615_160 Hb_178658_010 Hb_178658_010 Hb_000336_190--Hb_178658_010 Hb_000836_210 Hb_000836_210 Hb_000336_190--Hb_000836_210 Hb_000336_190--Hb_000003_760 Hb_002875_070 Hb_002875_070 Hb_000336_190--Hb_002875_070 Hb_002849_110 Hb_002849_110 Hb_000336_190--Hb_002849_110 Hb_000336_190--Hb_001472_140 Hb_000776_050 Hb_000776_050 Hb_002053_030--Hb_000776_050 Hb_002053_030--Hb_000345_500 Hb_006043_020 Hb_006043_020 Hb_002053_030--Hb_006043_020 Hb_032920_040 Hb_032920_040 Hb_002053_030--Hb_032920_040 Hb_000373_250 Hb_000373_250 Hb_002053_030--Hb_000373_250 Hb_001863_270 Hb_001863_270 Hb_002053_030--Hb_001863_270 Hb_000345_500--Hb_000776_050 Hb_000345_500--Hb_006043_020 Hb_006538_030 Hb_006538_030 Hb_000345_500--Hb_006538_030 Hb_000069_330 Hb_000069_330 Hb_000345_500--Hb_000069_330 Hb_000345_500--Hb_001863_270 Hb_002122_030--Hb_001246_160 Hb_000009_200 Hb_000009_200 Hb_002122_030--Hb_000009_200 Hb_000805_040 Hb_000805_040 Hb_002122_030--Hb_000805_040 Hb_005714_100 Hb_005714_100 Hb_002122_030--Hb_005714_100 Hb_011689_100 Hb_011689_100 Hb_002122_030--Hb_011689_100 Hb_004712_160 Hb_004712_160 Hb_002122_030--Hb_004712_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.481071 9.78955 4.35605 6.67851 1.38459 0.184841
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.923828 0.865072 0.577251 0.985461 0.142663

CAGE analysis