Hb_008959_040

Information

Type -
Description -
Location Contig8959: 40568-41017
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05450g
description POPTRDRAFT_421641; hypothetical protein
nr
ID XP_012092930.1
description PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
swissprot
ID Q9LK90
description Putative phospholipid-transporting ATPase 8 OS=Arabidopsis thaliana GN=ALA8 PE=3 SV=1
trembl
ID A0A067JKQ1
description Phospholipid-transporting ATPase OS=Jatropha curcas GN=JCGZ_05833 PE=3 SV=1
Gene Ontology
ID GO:0016021
description phospholipid-transporting atpase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008959_040 0.0 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
2 Hb_004631_200 0.1633164584 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001769_110 0.2083192434 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
4 Hb_000029_410 0.2118005374 - - AT14A, putative [Ricinus communis]
5 Hb_004994_250 0.2154846567 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
6 Hb_032202_130 0.2180051923 - - PREDICTED: uncharacterized protein LOC105643062 [Jatropha curcas]
7 Hb_000749_070 0.2182882926 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
8 Hb_004994_360 0.223718966 - - PREDICTED: putative ripening-related protein 1 [Populus euphratica]
9 Hb_011609_040 0.2246083793 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
10 Hb_000637_020 0.2251939307 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
11 Hb_002675_090 0.2260870351 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001059_090 0.2261647084 - - PREDICTED: F-box protein At1g61340 [Jatropha curcas]
13 Hb_005883_070 0.2273608445 - - PREDICTED: probable myosin-binding protein 5 [Jatropha curcas]
14 Hb_007253_010 0.232318693 - - syntaxin, putative [Ricinus communis]
15 Hb_001514_250 0.2323784835 - - GAST1 protein precursor, putative [Ricinus communis]
16 Hb_000594_110 0.2348933562 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
17 Hb_013358_020 0.2356314344 - - ccr4-associated factor, putative [Ricinus communis]
18 Hb_102437_010 0.2361466183 - - PREDICTED: B-cell receptor-associated protein 31 [Beta vulgaris subsp. vulgaris]
19 Hb_001758_130 0.2370143293 - - hypothetical protein JCGZ_25129 [Jatropha curcas]
20 Hb_006775_070 0.2396510168 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008959_040 Hb_008959_040 Hb_004631_200 Hb_004631_200 Hb_008959_040--Hb_004631_200 Hb_001769_110 Hb_001769_110 Hb_008959_040--Hb_001769_110 Hb_000029_410 Hb_000029_410 Hb_008959_040--Hb_000029_410 Hb_004994_250 Hb_004994_250 Hb_008959_040--Hb_004994_250 Hb_032202_130 Hb_032202_130 Hb_008959_040--Hb_032202_130 Hb_000749_070 Hb_000749_070 Hb_008959_040--Hb_000749_070 Hb_004631_200--Hb_000749_070 Hb_013358_020 Hb_013358_020 Hb_004631_200--Hb_013358_020 Hb_000072_190 Hb_000072_190 Hb_004631_200--Hb_000072_190 Hb_004631_200--Hb_004994_250 Hb_000637_020 Hb_000637_020 Hb_004631_200--Hb_000637_020 Hb_000445_100 Hb_000445_100 Hb_004631_200--Hb_000445_100 Hb_041895_040 Hb_041895_040 Hb_001769_110--Hb_041895_040 Hb_001769_110--Hb_000445_100 Hb_007253_010 Hb_007253_010 Hb_001769_110--Hb_007253_010 Hb_001769_110--Hb_000749_070 Hb_159809_050 Hb_159809_050 Hb_001769_110--Hb_159809_050 Hb_015026_040 Hb_015026_040 Hb_001769_110--Hb_015026_040 Hb_020967_010 Hb_020967_010 Hb_000029_410--Hb_020967_010 Hb_053519_010 Hb_053519_010 Hb_000029_410--Hb_053519_010 Hb_000336_190 Hb_000336_190 Hb_000029_410--Hb_000336_190 Hb_002053_030 Hb_002053_030 Hb_000029_410--Hb_002053_030 Hb_000345_500 Hb_000345_500 Hb_000029_410--Hb_000345_500 Hb_002122_030 Hb_002122_030 Hb_000029_410--Hb_002122_030 Hb_031822_010 Hb_031822_010 Hb_004994_250--Hb_031822_010 Hb_004994_250--Hb_000072_190 Hb_004994_250--Hb_001769_110 Hb_000003_240 Hb_000003_240 Hb_004994_250--Hb_000003_240 Hb_004994_250--Hb_013358_020 Hb_000260_610 Hb_000260_610 Hb_032202_130--Hb_000260_610 Hb_034310_010 Hb_034310_010 Hb_032202_130--Hb_034310_010 Hb_006775_070 Hb_006775_070 Hb_032202_130--Hb_006775_070 Hb_000960_120 Hb_000960_120 Hb_032202_130--Hb_000960_120 Hb_013344_010 Hb_013344_010 Hb_032202_130--Hb_013344_010 Hb_000577_050 Hb_000577_050 Hb_032202_130--Hb_000577_050 Hb_000749_070--Hb_013358_020 Hb_000749_070--Hb_007253_010 Hb_001246_160 Hb_001246_160 Hb_000749_070--Hb_001246_160 Hb_000749_070--Hb_159809_050 Hb_004117_170 Hb_004117_170 Hb_000749_070--Hb_004117_170 Hb_000035_050 Hb_000035_050 Hb_000749_070--Hb_000035_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.136342 1.27009 1.91227 1.87619 0.582439 0.0615678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.160516 0.252164 0.20855 0.106048 0

CAGE analysis