Hb_005016_180

Information

Type -
Description -
Location Contig5016: 152953-159636
Sequence    

Annotation

kegg
ID rcu:RCOM_1355230
description phosphoglycerate kinase, putative (EC:2.7.2.3)
nr
ID XP_002519506.1
description phosphoglycerate kinase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S0I7
description Phosphoglycerate kinase OS=Ricinus communis GN=RCOM_1355230 PE=3 SV=1
Gene Ontology
ID GO:0004618
description phosphoglycerate cytosolic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005016_180 0.0 - - phosphoglycerate kinase, putative [Ricinus communis]
2 Hb_000104_070 0.1278719183 - - PREDICTED: citrate-binding protein-like [Jatropha curcas]
3 Hb_002217_410 0.1740167634 - - hypothetical protein L484_027883 [Morus notabilis]
4 Hb_000896_130 0.2130918603 transcription factor TF Family: CPP cysteine-rich polycomb-like family protein [Populus trichocarpa]
5 Hb_004994_360 0.2496752591 - - PREDICTED: putative ripening-related protein 1 [Populus euphratica]
6 Hb_003762_010 0.2647335318 - - -
7 Hb_011161_030 0.2657314051 - - PREDICTED: uncharacterized protein LOC105638906 [Jatropha curcas]
8 Hb_001638_100 0.2706329525 - - PREDICTED: probable protein S-acyltransferase 12 [Vitis vinifera]
9 Hb_034310_010 0.2721354418 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
10 Hb_007879_010 0.2830213319 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
11 Hb_144649_010 0.2942235207 - - 60S ribosomal protein L34A [Hevea brasiliensis]
12 Hb_131864_030 0.2972666751 transcription factor TF Family: C2H2 transcription factor, putative [Ricinus communis]
13 Hb_129459_010 0.3017341173 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
14 Hb_135569_010 0.3019262792 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
15 Hb_002613_030 0.3062326711 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
16 Hb_040948_020 0.3068616851 - - -
17 Hb_032202_130 0.3070675432 - - PREDICTED: uncharacterized protein LOC105643062 [Jatropha curcas]
18 Hb_001318_160 0.3121037849 - - Polygalacturonase precursor, putative [Ricinus communis]
19 Hb_000261_340 0.31818191 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
20 Hb_008221_130 0.3188217634 - - hypothetical protein VITISV_016971 [Vitis vinifera]

Gene co-expression network

sample Hb_005016_180 Hb_005016_180 Hb_000104_070 Hb_000104_070 Hb_005016_180--Hb_000104_070 Hb_002217_410 Hb_002217_410 Hb_005016_180--Hb_002217_410 Hb_000896_130 Hb_000896_130 Hb_005016_180--Hb_000896_130 Hb_004994_360 Hb_004994_360 Hb_005016_180--Hb_004994_360 Hb_003762_010 Hb_003762_010 Hb_005016_180--Hb_003762_010 Hb_011161_030 Hb_011161_030 Hb_005016_180--Hb_011161_030 Hb_000104_070--Hb_002217_410 Hb_001862_080 Hb_001862_080 Hb_000104_070--Hb_001862_080 Hb_000104_070--Hb_004994_360 Hb_045985_010 Hb_045985_010 Hb_000104_070--Hb_045985_010 Hb_000230_310 Hb_000230_310 Hb_000104_070--Hb_000230_310 Hb_002217_410--Hb_001862_080 Hb_135569_010 Hb_135569_010 Hb_002217_410--Hb_135569_010 Hb_002217_410--Hb_045985_010 Hb_002217_410--Hb_000230_310 Hb_002613_030 Hb_002613_030 Hb_000896_130--Hb_002613_030 Hb_144649_010 Hb_144649_010 Hb_000896_130--Hb_144649_010 Hb_000896_130--Hb_003762_010 Hb_002486_090 Hb_002486_090 Hb_000896_130--Hb_002486_090 Hb_000083_110 Hb_000083_110 Hb_000896_130--Hb_000083_110 Hb_001318_160 Hb_001318_160 Hb_000896_130--Hb_001318_160 Hb_008959_040 Hb_008959_040 Hb_004994_360--Hb_008959_040 Hb_032202_130 Hb_032202_130 Hb_004994_360--Hb_032202_130 Hb_001329_190 Hb_001329_190 Hb_004994_360--Hb_001329_190 Hb_005211_150 Hb_005211_150 Hb_004994_360--Hb_005211_150 Hb_003762_010--Hb_002613_030 Hb_052764_120 Hb_052764_120 Hb_003762_010--Hb_052764_120 Hb_005348_130 Hb_005348_130 Hb_003762_010--Hb_005348_130 Hb_010578_020 Hb_010578_020 Hb_003762_010--Hb_010578_020 Hb_003207_220 Hb_003207_220 Hb_003762_010--Hb_003207_220 Hb_129459_010 Hb_129459_010 Hb_011161_030--Hb_129459_010 Hb_034310_010 Hb_034310_010 Hb_011161_030--Hb_034310_010 Hb_004495_010 Hb_004495_010 Hb_011161_030--Hb_004495_010 Hb_074184_010 Hb_074184_010 Hb_011161_030--Hb_074184_010 Hb_002374_330 Hb_002374_330 Hb_011161_030--Hb_002374_330 Hb_000172_490 Hb_000172_490 Hb_011161_030--Hb_000172_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0618217 0.211556 0.0575053 0.0880766 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis