Hb_004495_010

Information

Type -
Description -
Location Contig4495: 4946-5646
Sequence    

Annotation

kegg
ID pda:103701664
description thioredoxin reductase NTRC
nr
ID XP_011075337.1
description PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
swissprot
ID O22229
description NADPH-dependent thioredoxin reductase 3 OS=Arabidopsis thaliana GN=NTRC PE=1 SV=2
trembl
ID A0A0D2RJG9
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G091100 PE=4 SV=1
Gene Ontology
ID GO:0009570
description thioredoxin reductase ntrc

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43115: 5217-5676
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004495_010 0.0 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
2 Hb_183192_010 0.1561737971 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
3 Hb_000521_180 0.1929339207 - - PREDICTED: uncharacterized protein LOC105650335 [Jatropha curcas]
4 Hb_123475_020 0.1936941737 - - -
5 Hb_065755_020 0.1987028717 - - choline monooxygenase, putative [Ricinus communis]
6 Hb_074184_010 0.1988568981 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
7 Hb_009979_010 0.2069904221 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_007163_080 0.2085915432 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
9 Hb_034310_010 0.20951664 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
10 Hb_002965_070 0.2109607058 - - PREDICTED: extensin [Jatropha curcas]
11 Hb_011161_030 0.2117444327 - - PREDICTED: uncharacterized protein LOC105638906 [Jatropha curcas]
12 Hb_008250_020 0.2176150541 - - PREDICTED: U-box domain-containing protein 15-like isoform X1 [Jatropha curcas]
13 Hb_005883_070 0.2200940119 - - PREDICTED: probable myosin-binding protein 5 [Jatropha curcas]
14 Hb_001141_200 0.2254856484 - - PREDICTED: LOW QUALITY PROTEIN: parafibromin [Prunus mume]
15 Hb_000260_610 0.229441887 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
16 Hb_001486_210 0.232891528 - - -
17 Hb_006153_010 0.2364461225 - - PREDICTED: monocopper oxidase-like protein SKU5 [Populus euphratica]
18 Hb_047442_010 0.2369288714 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
19 Hb_000308_010 0.2373084195 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
20 Hb_008948_070 0.2384407274 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004495_010 Hb_004495_010 Hb_183192_010 Hb_183192_010 Hb_004495_010--Hb_183192_010 Hb_000521_180 Hb_000521_180 Hb_004495_010--Hb_000521_180 Hb_123475_020 Hb_123475_020 Hb_004495_010--Hb_123475_020 Hb_065755_020 Hb_065755_020 Hb_004495_010--Hb_065755_020 Hb_074184_010 Hb_074184_010 Hb_004495_010--Hb_074184_010 Hb_009979_010 Hb_009979_010 Hb_004495_010--Hb_009979_010 Hb_183192_010--Hb_009979_010 Hb_001628_020 Hb_001628_020 Hb_183192_010--Hb_001628_020 Hb_001369_670 Hb_001369_670 Hb_183192_010--Hb_001369_670 Hb_029689_010 Hb_029689_010 Hb_183192_010--Hb_029689_010 Hb_012022_020 Hb_012022_020 Hb_183192_010--Hb_012022_020 Hb_013834_010 Hb_013834_010 Hb_000521_180--Hb_013834_010 Hb_002325_030 Hb_002325_030 Hb_000521_180--Hb_002325_030 Hb_000134_030 Hb_000134_030 Hb_000521_180--Hb_000134_030 Hb_000260_610 Hb_000260_610 Hb_000521_180--Hb_000260_610 Hb_002400_050 Hb_002400_050 Hb_000521_180--Hb_002400_050 Hb_002874_210 Hb_002874_210 Hb_123475_020--Hb_002874_210 Hb_034310_010 Hb_034310_010 Hb_123475_020--Hb_034310_010 Hb_028639_040 Hb_028639_040 Hb_123475_020--Hb_028639_040 Hb_107174_010 Hb_107174_010 Hb_123475_020--Hb_107174_010 Hb_005686_100 Hb_005686_100 Hb_123475_020--Hb_005686_100 Hb_095471_020 Hb_095471_020 Hb_065755_020--Hb_095471_020 Hb_078954_010 Hb_078954_010 Hb_065755_020--Hb_078954_010 Hb_046109_010 Hb_046109_010 Hb_065755_020--Hb_046109_010 Hb_004667_040 Hb_004667_040 Hb_065755_020--Hb_004667_040 Hb_032202_050 Hb_032202_050 Hb_065755_020--Hb_032202_050 Hb_002965_070 Hb_002965_070 Hb_065755_020--Hb_002965_070 Hb_008203_020 Hb_008203_020 Hb_074184_010--Hb_008203_020 Hb_074184_010--Hb_029689_010 Hb_074184_010--Hb_065755_020 Hb_074184_010--Hb_032202_050 Hb_000221_230 Hb_000221_230 Hb_074184_010--Hb_000221_230 Hb_009979_010--Hb_012022_020 Hb_004021_090 Hb_004021_090 Hb_009979_010--Hb_004021_090 Hb_009979_010--Hb_001628_020 Hb_001141_200 Hb_001141_200 Hb_009979_010--Hb_001141_200 Hb_001004_050 Hb_001004_050 Hb_009979_010--Hb_001004_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.843804 4.96454 8.50757 2.86889 0.822148 0.413316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.907022 0

CAGE analysis