Hb_001141_200

Information

Type -
Description -
Location Contig1141: 140560-140847
Sequence    

Annotation

kegg
ID pmum:103324030
description parafibromin
nr
ID XP_008224288.1
description PREDICTED: LOW QUALITY PROTEIN: parafibromin [Prunus mume]
swissprot
ID -
description -
trembl
ID M0W3U6
description Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1
Gene Ontology
ID GO:0005634
description parafibromin-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 032_N21.ab1: 141529-142074

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_200 0.0 - - PREDICTED: LOW QUALITY PROTEIN: parafibromin [Prunus mume]
2 Hb_001628_020 0.1141697056 - - receptor serine/threonine kinase, putative [Ricinus communis]
3 Hb_006395_020 0.1528669273 - - hypothetical protein RCOM_0725510 [Ricinus communis]
4 Hb_012404_050 0.1551818708 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
5 Hb_043522_010 0.1607244251 - - -
6 Hb_158111_010 0.1644112161 - - S-locus-specific glycoprotein precursor, putative [Ricinus communis]
7 Hb_000819_020 0.1676636149 - - hypothetical protein PRUPE_ppa020290mg, partial [Prunus persica]
8 Hb_009979_010 0.1680969946 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_001846_030 0.168740692 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
10 Hb_000302_150 0.1690542316 transcription factor TF Family: WRKY hypothetical protein RCOM_1581940 [Ricinus communis]
11 Hb_133845_010 0.1728443221 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
12 Hb_012022_020 0.1731804592 transcription factor TF Family: G2-like hypothetical protein POPTR_0006s10190g [Populus trichocarpa]
13 Hb_000110_330 0.1798114965 - - PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]
14 Hb_001628_030 0.1815185555 - - PREDICTED: uncharacterized protein LOC105629266 isoform X1 [Jatropha curcas]
15 Hb_002471_190 0.1842903231 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
16 Hb_154466_010 0.1873401334 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
17 Hb_017693_040 0.1875323129 - - tyrosine kinase family protein [Medicago truncatula]
18 Hb_008948_070 0.1879975179 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
19 Hb_001635_230 0.1885870375 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_183192_010 0.1889138283 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]

Gene co-expression network

sample Hb_001141_200 Hb_001141_200 Hb_001628_020 Hb_001628_020 Hb_001141_200--Hb_001628_020 Hb_006395_020 Hb_006395_020 Hb_001141_200--Hb_006395_020 Hb_012404_050 Hb_012404_050 Hb_001141_200--Hb_012404_050 Hb_043522_010 Hb_043522_010 Hb_001141_200--Hb_043522_010 Hb_158111_010 Hb_158111_010 Hb_001141_200--Hb_158111_010 Hb_000819_020 Hb_000819_020 Hb_001141_200--Hb_000819_020 Hb_010721_010 Hb_010721_010 Hb_001628_020--Hb_010721_010 Hb_002936_030 Hb_002936_030 Hb_001628_020--Hb_002936_030 Hb_007574_050 Hb_007574_050 Hb_001628_020--Hb_007574_050 Hb_000087_200 Hb_000087_200 Hb_001628_020--Hb_000087_200 Hb_005048_120 Hb_005048_120 Hb_001628_020--Hb_005048_120 Hb_000302_150 Hb_000302_150 Hb_006395_020--Hb_000302_150 Hb_001405_250 Hb_001405_250 Hb_006395_020--Hb_001405_250 Hb_067028_010 Hb_067028_010 Hb_006395_020--Hb_067028_010 Hb_006395_020--Hb_012404_050 Hb_167186_010 Hb_167186_010 Hb_006395_020--Hb_167186_010 Hb_001922_100 Hb_001922_100 Hb_006395_020--Hb_001922_100 Hb_000110_330 Hb_000110_330 Hb_012404_050--Hb_000110_330 Hb_055147_010 Hb_055147_010 Hb_012404_050--Hb_055147_010 Hb_012545_080 Hb_012545_080 Hb_012404_050--Hb_012545_080 Hb_133845_010 Hb_133845_010 Hb_012404_050--Hb_133845_010 Hb_007407_010 Hb_007407_010 Hb_012404_050--Hb_007407_010 Hb_004785_120 Hb_004785_120 Hb_012404_050--Hb_004785_120 Hb_004544_010 Hb_004544_010 Hb_043522_010--Hb_004544_010 Hb_008725_030 Hb_008725_030 Hb_043522_010--Hb_008725_030 Hb_004785_160 Hb_004785_160 Hb_043522_010--Hb_004785_160 Hb_043522_010--Hb_012404_050 Hb_002973_070 Hb_002973_070 Hb_043522_010--Hb_002973_070 Hb_001971_030 Hb_001971_030 Hb_043522_010--Hb_001971_030 Hb_154466_010 Hb_154466_010 Hb_158111_010--Hb_154466_010 Hb_002391_020 Hb_002391_020 Hb_158111_010--Hb_002391_020 Hb_002471_190 Hb_002471_190 Hb_158111_010--Hb_002471_190 Hb_001635_230 Hb_001635_230 Hb_158111_010--Hb_001635_230 Hb_002615_010 Hb_002615_010 Hb_158111_010--Hb_002615_010 Hb_002010_020 Hb_002010_020 Hb_158111_010--Hb_002010_020 Hb_164577_010 Hb_164577_010 Hb_000819_020--Hb_164577_010 Hb_008637_020 Hb_008637_020 Hb_000819_020--Hb_008637_020 Hb_002289_180 Hb_002289_180 Hb_000819_020--Hb_002289_180 Hb_000164_160 Hb_000164_160 Hb_000819_020--Hb_000164_160 Hb_099188_010 Hb_099188_010 Hb_000819_020--Hb_099188_010 Hb_000997_130 Hb_000997_130 Hb_000819_020--Hb_000997_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.703948 16.4761 12.2505 5.33069 0 0.506703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.74928 0

CAGE analysis