Hb_006395_020

Information

Type -
Description -
Location Contig6395: 11330-14172
Sequence    

Annotation

kegg
ID rcu:RCOM_0725510
description hypothetical protein
nr
ID XP_002524903.1
description hypothetical protein RCOM_0725510 [Ricinus communis]
swissprot
ID Q3ECH2
description Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2
trembl
ID B9SFY4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0725510 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52068: 14136-17555
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006395_020 0.0 - - hypothetical protein RCOM_0725510 [Ricinus communis]
2 Hb_000302_150 0.1150438759 transcription factor TF Family: WRKY hypothetical protein RCOM_1581940 [Ricinus communis]
3 Hb_001405_250 0.1203496606 - - PREDICTED: uncharacterized protein LOC105645451 [Jatropha curcas]
4 Hb_067028_010 0.1261756833 - - BnaC03g72040D [Brassica napus]
5 Hb_012404_050 0.1290800167 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
6 Hb_167186_010 0.1300981951 - - cation-transporting atpase plant, putative [Ricinus communis]
7 Hb_001922_100 0.1381922062 - - S-type anion channel SLAH2 [Triticum urartu]
8 Hb_001846_030 0.1397377484 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
9 Hb_158111_010 0.1398388649 - - S-locus-specific glycoprotein precursor, putative [Ricinus communis]
10 Hb_047955_010 0.1417601752 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
11 Hb_001619_140 0.142870698 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
12 Hb_002391_020 0.1462700421 transcription factor TF Family: NAC PREDICTED: putative NAC domain-containing protein 94 [Jatropha curcas]
13 Hb_009683_010 0.147474842 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_001141_200 0.1528669273 - - PREDICTED: LOW QUALITY PROTEIN: parafibromin [Prunus mume]
15 Hb_154466_010 0.1530962165 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
16 Hb_012545_080 0.1540706852 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
17 Hb_005054_330 0.1548296855 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
18 Hb_000032_150 0.1574777665 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
19 Hb_002119_030 0.1586004788 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
20 Hb_002471_190 0.1591694737 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]

Gene co-expression network

sample Hb_006395_020 Hb_006395_020 Hb_000302_150 Hb_000302_150 Hb_006395_020--Hb_000302_150 Hb_001405_250 Hb_001405_250 Hb_006395_020--Hb_001405_250 Hb_067028_010 Hb_067028_010 Hb_006395_020--Hb_067028_010 Hb_012404_050 Hb_012404_050 Hb_006395_020--Hb_012404_050 Hb_167186_010 Hb_167186_010 Hb_006395_020--Hb_167186_010 Hb_001922_100 Hb_001922_100 Hb_006395_020--Hb_001922_100 Hb_000302_150--Hb_001922_100 Hb_000302_150--Hb_067028_010 Hb_158111_010 Hb_158111_010 Hb_000302_150--Hb_158111_010 Hb_002542_030 Hb_002542_030 Hb_000302_150--Hb_002542_030 Hb_002119_030 Hb_002119_030 Hb_000302_150--Hb_002119_030 Hb_074672_010 Hb_074672_010 Hb_001405_250--Hb_074672_010 Hb_000025_490 Hb_000025_490 Hb_001405_250--Hb_000025_490 Hb_001405_250--Hb_067028_010 Hb_001846_030 Hb_001846_030 Hb_001405_250--Hb_001846_030 Hb_001405_250--Hb_002119_030 Hb_067028_010--Hb_002119_030 Hb_067028_010--Hb_001922_100 Hb_067028_010--Hb_167186_010 Hb_000110_330 Hb_000110_330 Hb_012404_050--Hb_000110_330 Hb_055147_010 Hb_055147_010 Hb_012404_050--Hb_055147_010 Hb_012545_080 Hb_012545_080 Hb_012404_050--Hb_012545_080 Hb_133845_010 Hb_133845_010 Hb_012404_050--Hb_133845_010 Hb_007407_010 Hb_007407_010 Hb_012404_050--Hb_007407_010 Hb_004785_120 Hb_004785_120 Hb_012404_050--Hb_004785_120 Hb_005054_330 Hb_005054_330 Hb_167186_010--Hb_005054_330 Hb_007858_020 Hb_007858_020 Hb_167186_010--Hb_007858_020 Hb_008725_220 Hb_008725_220 Hb_167186_010--Hb_008725_220 Hb_000959_240 Hb_000959_240 Hb_167186_010--Hb_000959_240 Hb_167186_010--Hb_000025_490 Hb_167186_010--Hb_002119_030 Hb_018043_010 Hb_018043_010 Hb_001922_100--Hb_018043_010 Hb_001922_100--Hb_158111_010 Hb_001922_100--Hb_002119_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.86087 2.69086 0.900738 0 0.0110548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.387409 0

CAGE analysis