Hb_158111_010

Information

Type -
Description -
Location Contig158111: 2-1267
Sequence    

Annotation

kegg
ID rcu:RCOM_0539160
description S-locus-specific glycoprotein precursor, putative
nr
ID XP_002525879.1
description S-locus-specific glycoprotein precursor, putative [Ricinus communis]
swissprot
ID Q39688
description Epidermis-specific secreted glycoprotein EP1 OS=Daucus carota GN=EP1 PE=1 SV=1
trembl
ID B9SIR0
description S-locus-specific glycoprotein, putative OS=Ricinus communis GN=RCOM_0539160 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13931: 202-368
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158111_010 0.0 - - S-locus-specific glycoprotein precursor, putative [Ricinus communis]
2 Hb_154466_010 0.1004388435 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
3 Hb_002391_020 0.1030890512 transcription factor TF Family: NAC PREDICTED: putative NAC domain-containing protein 94 [Jatropha curcas]
4 Hb_002471_190 0.1123607392 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
5 Hb_001635_230 0.1137337555 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_002615_010 0.1198098129 - - Uncharacterized protein TCM_040942 [Theobroma cacao]
7 Hb_002010_020 0.1261820811 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
8 Hb_017693_040 0.1275370606 - - tyrosine kinase family protein [Medicago truncatula]
9 Hb_000302_150 0.1334192955 transcription factor TF Family: WRKY hypothetical protein RCOM_1581940 [Ricinus communis]
10 Hb_001619_140 0.1360604502 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
11 Hb_006395_020 0.1398388649 - - hypothetical protein RCOM_0725510 [Ricinus communis]
12 Hb_000359_260 0.1444660803 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
13 Hb_001922_100 0.1445961044 - - S-type anion channel SLAH2 [Triticum urartu]
14 Hb_067028_010 0.1468379379 - - BnaC03g72040D [Brassica napus]
15 Hb_005357_270 0.1529969069 - - Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative [Ricinus communis]
16 Hb_120011_010 0.1531648189 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
17 Hb_012404_050 0.1537899444 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
18 Hb_004109_240 0.1542021489 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
19 Hb_000087_200 0.1547653287 - - PREDICTED: uncharacterized protein LOC105641954 [Jatropha curcas]
20 Hb_074672_010 0.1550712578 - - receptor serine/threonine kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_158111_010 Hb_158111_010 Hb_154466_010 Hb_154466_010 Hb_158111_010--Hb_154466_010 Hb_002391_020 Hb_002391_020 Hb_158111_010--Hb_002391_020 Hb_002471_190 Hb_002471_190 Hb_158111_010--Hb_002471_190 Hb_001635_230 Hb_001635_230 Hb_158111_010--Hb_001635_230 Hb_002615_010 Hb_002615_010 Hb_158111_010--Hb_002615_010 Hb_002010_020 Hb_002010_020 Hb_158111_010--Hb_002010_020 Hb_154466_010--Hb_002010_020 Hb_154466_010--Hb_002471_190 Hb_154466_010--Hb_002391_020 Hb_001619_140 Hb_001619_140 Hb_154466_010--Hb_001619_140 Hb_008202_020 Hb_008202_020 Hb_154466_010--Hb_008202_020 Hb_002391_020--Hb_002010_020 Hb_003119_030 Hb_003119_030 Hb_002391_020--Hb_003119_030 Hb_002391_020--Hb_002471_190 Hb_002391_020--Hb_001619_140 Hb_002471_190--Hb_002010_020 Hb_002471_190--Hb_001635_230 Hb_000087_200 Hb_000087_200 Hb_002471_190--Hb_000087_200 Hb_004109_240 Hb_004109_240 Hb_002471_190--Hb_004109_240 Hb_001635_230--Hb_002615_010 Hb_017693_040 Hb_017693_040 Hb_001635_230--Hb_017693_040 Hb_000359_260 Hb_000359_260 Hb_001635_230--Hb_000359_260 Hb_001619_020 Hb_001619_020 Hb_001635_230--Hb_001619_020 Hb_002615_010--Hb_002471_190 Hb_002107_110 Hb_002107_110 Hb_002615_010--Hb_002107_110 Hb_002615_010--Hb_002391_020 Hb_002615_010--Hb_002010_020 Hb_002010_020--Hb_008202_020 Hb_004899_360 Hb_004899_360 Hb_002010_020--Hb_004899_360 Hb_002010_020--Hb_001619_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.74796 1.27516 0.35201 0 0.0172779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.029944 0 0.28761 0.06215

CAGE analysis