Hb_001628_020

Information

Type -
Description -
Location Contig1628: 16854-18769
Sequence    

Annotation

kegg
ID rcu:RCOM_1579690
description receptor serine/threonine kinase, putative (EC:2.7.10.2)
nr
ID XP_002513562.1
description receptor serine/threonine kinase, putative [Ricinus communis]
swissprot
ID Q9FID6
description Probable receptor-like protein kinase At5g39020 OS=Arabidopsis thaliana GN=At5g39020 PE=2 SV=1
trembl
ID B9RIJ3
description Receptor serine/threonine kinase, putative OS=Ricinus communis GN=RCOM_1579690 PE=3 SV=1
Gene Ontology
ID GO:0004672
description glycerophosphodiester phosphodiesterase protein kinase domain-containing gdpdl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14765: 17888-18343 , PASA_asmbl_14766: 18458-18844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001628_020 0.0 - - receptor serine/threonine kinase, putative [Ricinus communis]
2 Hb_001141_200 0.1141697056 - - PREDICTED: LOW QUALITY PROTEIN: parafibromin [Prunus mume]
3 Hb_010721_010 0.1451112831 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
4 Hb_002936_030 0.1506844035 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
5 Hb_007574_050 0.1522289293 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
6 Hb_000087_200 0.1522455302 - - PREDICTED: uncharacterized protein LOC105641954 [Jatropha curcas]
7 Hb_005048_120 0.1523927925 - - -
8 Hb_183192_010 0.1595385969 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
9 Hb_028486_010 0.1622594001 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
10 Hb_001369_670 0.1623352968 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
11 Hb_046109_010 0.1642997643 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
12 Hb_002471_190 0.1665755199 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
13 Hb_160653_010 0.1673432387 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
14 Hb_009979_010 0.1677543261 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_033053_010 0.1722067172 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
16 Hb_004109_240 0.1722239103 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
17 Hb_001628_030 0.1739364554 - - PREDICTED: uncharacterized protein LOC105629266 isoform X1 [Jatropha curcas]
18 Hb_012022_020 0.1758413309 transcription factor TF Family: G2-like hypothetical protein POPTR_0006s10190g [Populus trichocarpa]
19 Hb_001430_010 0.1772916182 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Jatropha curcas]
20 Hb_017693_040 0.1773485022 - - tyrosine kinase family protein [Medicago truncatula]

Gene co-expression network

sample Hb_001628_020 Hb_001628_020 Hb_001141_200 Hb_001141_200 Hb_001628_020--Hb_001141_200 Hb_010721_010 Hb_010721_010 Hb_001628_020--Hb_010721_010 Hb_002936_030 Hb_002936_030 Hb_001628_020--Hb_002936_030 Hb_007574_050 Hb_007574_050 Hb_001628_020--Hb_007574_050 Hb_000087_200 Hb_000087_200 Hb_001628_020--Hb_000087_200 Hb_005048_120 Hb_005048_120 Hb_001628_020--Hb_005048_120 Hb_006395_020 Hb_006395_020 Hb_001141_200--Hb_006395_020 Hb_012404_050 Hb_012404_050 Hb_001141_200--Hb_012404_050 Hb_043522_010 Hb_043522_010 Hb_001141_200--Hb_043522_010 Hb_158111_010 Hb_158111_010 Hb_001141_200--Hb_158111_010 Hb_000819_020 Hb_000819_020 Hb_001141_200--Hb_000819_020 Hb_023386_060 Hb_023386_060 Hb_010721_010--Hb_023386_060 Hb_002048_070 Hb_002048_070 Hb_010721_010--Hb_002048_070 Hb_001430_010 Hb_001430_010 Hb_010721_010--Hb_001430_010 Hb_002676_110 Hb_002676_110 Hb_010721_010--Hb_002676_110 Hb_011915_020 Hb_011915_020 Hb_010721_010--Hb_011915_020 Hb_001663_090 Hb_001663_090 Hb_010721_010--Hb_001663_090 Hb_002936_030--Hb_005048_120 Hb_001247_160 Hb_001247_160 Hb_002936_030--Hb_001247_160 Hb_002936_030--Hb_007574_050 Hb_005282_010 Hb_005282_010 Hb_002936_030--Hb_005282_010 Hb_003078_070 Hb_003078_070 Hb_002936_030--Hb_003078_070 Hb_012272_010 Hb_012272_010 Hb_002936_030--Hb_012272_010 Hb_098160_010 Hb_098160_010 Hb_007574_050--Hb_098160_010 Hb_001898_010 Hb_001898_010 Hb_007574_050--Hb_001898_010 Hb_005375_070 Hb_005375_070 Hb_007574_050--Hb_005375_070 Hb_000402_030 Hb_000402_030 Hb_007574_050--Hb_000402_030 Hb_001405_060 Hb_001405_060 Hb_007574_050--Hb_001405_060 Hb_028486_010 Hb_028486_010 Hb_000087_200--Hb_028486_010 Hb_004109_240 Hb_004109_240 Hb_000087_200--Hb_004109_240 Hb_002471_190 Hb_002471_190 Hb_000087_200--Hb_002471_190 Hb_017693_040 Hb_017693_040 Hb_000087_200--Hb_017693_040 Hb_121540_010 Hb_121540_010 Hb_000087_200--Hb_121540_010 Hb_021254_020 Hb_021254_020 Hb_000087_200--Hb_021254_020 Hb_005048_120--Hb_012272_010 Hb_005048_120--Hb_010721_010 Hb_005048_120--Hb_001247_160 Hb_094437_050 Hb_094437_050 Hb_005048_120--Hb_094437_050 Hb_007904_290 Hb_007904_290 Hb_005048_120--Hb_007904_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.441169 7.30994 5.42621 3.49742 0 0.212796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0248722 0 0 1.09094 0.28872

CAGE analysis