Hb_000819_020

Information

Type -
Description -
Location Contig819: 62043-74096
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa020290mg
description hypothetical protein
nr
ID XP_007206578.1
description hypothetical protein PRUPE_ppa020290mg, partial [Prunus persica]
swissprot
ID P93756
description G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 OS=Arabidopsis thaliana GN=SD31 PE=3 SV=1
trembl
ID A0A0D2VUS5
description Gossypium raimondii chromosome 12, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_012G032200 PE=4 SV=1
Gene Ontology
ID GO:0005488
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59528: 71326-71442 , PASA_asmbl_59529: 73297-73462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000819_020 0.0 - - hypothetical protein PRUPE_ppa020290mg, partial [Prunus persica]
2 Hb_164577_010 0.1130504132 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
3 Hb_008637_020 0.1152655618 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002289_180 0.1234223763 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Nelumbo nucifera]
5 Hb_000164_160 0.1282447089 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
6 Hb_099188_010 0.1299165055 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_000997_130 0.1307332363 - - DNA binding protein, putative [Ricinus communis]
8 Hb_112703_010 0.1310301629 - - PREDICTED: cytochrome P450 CYP72A219-like [Prunus mume]
9 Hb_128851_020 0.1338250012 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_002542_030 0.136305967 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
11 Hb_032071_010 0.1365067846 - - hypothetical protein EUGRSUZ_J02969 [Eucalyptus grandis]
12 Hb_007546_010 0.138274106 - - unnamed protein product [Vitis vinifera]
13 Hb_012022_020 0.1430480963 transcription factor TF Family: G2-like hypothetical protein POPTR_0006s10190g [Populus trichocarpa]
14 Hb_001511_200 0.1437747521 - - Embryonic abundant protein, putative [Ricinus communis]
15 Hb_010477_020 0.1455448256 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
16 Hb_000836_180 0.1485038593 - - ferric reductase oxidase [Manihot esculenta]
17 Hb_022137_020 0.1508412737 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
18 Hb_003207_230 0.1535837778 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
19 Hb_046610_010 0.1551680557 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_002548_030 0.1561063114 - - PREDICTED: uncharacterized protein LOC103343650 [Prunus mume]

Gene co-expression network

sample Hb_000819_020 Hb_000819_020 Hb_164577_010 Hb_164577_010 Hb_000819_020--Hb_164577_010 Hb_008637_020 Hb_008637_020 Hb_000819_020--Hb_008637_020 Hb_002289_180 Hb_002289_180 Hb_000819_020--Hb_002289_180 Hb_000164_160 Hb_000164_160 Hb_000819_020--Hb_000164_160 Hb_099188_010 Hb_099188_010 Hb_000819_020--Hb_099188_010 Hb_000997_130 Hb_000997_130 Hb_000819_020--Hb_000997_130 Hb_046610_010 Hb_046610_010 Hb_164577_010--Hb_046610_010 Hb_164577_010--Hb_000997_130 Hb_007546_010 Hb_007546_010 Hb_164577_010--Hb_007546_010 Hb_164577_010--Hb_008637_020 Hb_164577_010--Hb_002289_180 Hb_128851_020 Hb_128851_020 Hb_008637_020--Hb_128851_020 Hb_008637_020--Hb_099188_010 Hb_008637_020--Hb_002289_180 Hb_002542_030 Hb_002542_030 Hb_008637_020--Hb_002542_030 Hb_001511_200 Hb_001511_200 Hb_008637_020--Hb_001511_200 Hb_112703_010 Hb_112703_010 Hb_002289_180--Hb_112703_010 Hb_002289_180--Hb_000997_130 Hb_032071_010 Hb_032071_010 Hb_002289_180--Hb_032071_010 Hb_008651_010 Hb_008651_010 Hb_002289_180--Hb_008651_010 Hb_002289_180--Hb_099188_010 Hb_005054_330 Hb_005054_330 Hb_000164_160--Hb_005054_330 Hb_000164_160--Hb_002542_030 Hb_004899_010 Hb_004899_010 Hb_000164_160--Hb_004899_010 Hb_000164_160--Hb_002289_180 Hb_000627_130 Hb_000627_130 Hb_000164_160--Hb_000627_130 Hb_000164_160--Hb_008637_020 Hb_002548_030 Hb_002548_030 Hb_099188_010--Hb_002548_030 Hb_099188_010--Hb_128851_020 Hb_000359_230 Hb_000359_230 Hb_099188_010--Hb_000359_230 Hb_110356_010 Hb_110356_010 Hb_099188_010--Hb_110356_010 Hb_001677_140 Hb_001677_140 Hb_099188_010--Hb_001677_140 Hb_034581_010 Hb_034581_010 Hb_099188_010--Hb_034581_010 Hb_000997_130--Hb_046610_010 Hb_000997_130--Hb_007546_010 Hb_000997_130--Hb_000164_160 Hb_010223_010 Hb_010223_010 Hb_000997_130--Hb_010223_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00415855 0.245432 0.201307 0.0883154 0 0.00725629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00293366 0

CAGE analysis